SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9274

Length: 548 nt

UniGene Fasta

>biog2_v2.0_unigene9274
ACGATGCATTACTTGGTCTTCTTTCCTGATGATTTTGTCTTCATAGCACATCATCTGGCCACCTTCTGTGTTATGGCATCCTGCCGCTACTATGTCGGATACGGTGGTTTAACTGTCATGTCCCTCCTCTTTTTGGCGGAAATTACCAGTGGCTGTCAAAATGCCTGGACTCTTGCCAGAATTGCCAGGCTTGAATCCTCACGGATTGAGCTAATTTACAAAATTTTATCTCCCTTGTTTTATTCATTCTACACTGTTGTGCGGGATTTGTTGCTCCATTCTTATCTATTACCTAGCTCAGTTCTACATACATGGAAAGCCGATGATGTCATTCCAAGGTGGTTGGCATATTGTTGGATCACCATAGTGGTTATGGCAATATTTGGAAGTATGGCATGGATTCTTAATCTGTGGATTGAGTTATTCAGATACAATGCTCGAACATATTCATATAAGTGTATCAAGACAATGTGAAAGTGACATCAGGGTAGACAGTCCCCCATTGTGGCACTTCATCTTCCCACCTATGAGGGATGTTTACATTGAGT

Ace file of the UniGene biog2_v2.0_unigene9274

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18476	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	protein	-	-	2.66319e-33	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	TRAM/LAG1/CLN8 homology domain	IPR006634	-	0.0	-
Sma3	Protein of unknown function DUF573	IPR007592	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT42

Fln msg: your sequence is shorter than subject: 158 - 254

Fln protein: TMHYLVFFPDDFVFIAHHLATFCVMASCRYYVGYGGLTVMSLLFLAEITSGCQNAWTLARIARLESSRIELIYKILSPLFYSFYTVVRDLLLHSYLLPSSVLHTWKADDVIPRWLAYCWITIVVMAIFGSMAWILNLWIELFRYNARTYSYKCIKTM*

Protein Length: 159

Fln nts: ACGATGCATTACTTGGTCTTCTTTCCTGATGATTTTGTCTTCATAGCACATCATCTGGCCACCTTCTGTGTTATGGCATCCTGCCGCTACTATGTCGGATACGGTGGTTTAACTGTCATGTCCCTCCTCTTTTTGGCGGAAATTACCAGTGGCTGTCAAAATGCCTGGACTCTTGCCAGAATTGCCAGGCTTGAATCCTCACGGATTGAGCTAATTTACAAAATTTTATCTCCCTTGTTTTATTCATTCTACACTGTTGTGCGGGATTTGTTGCTCCATTCTTATCTATTACCTAGCTCAGTTCTACATACATGGAAAGCCGATGATGTCATTCCAAGGTGGTTGGCATATTGTTGGATCACCATAGTGGTTATGGCAATATTTGGAAGTATGGCATGGATTCTTAATCTGTGGATTGAGTTATTCAGATACAATGCTCGAACATATTCATATAAGTGTATCAAGACAATGTGA___AAGTGACATCAGGGTAGACAGTCCCCCATTGTGGCACTTCATCTTCCCACCTATGAGGGATGTTTACATTGAGT

Fln Alignment:

biogeco2_mira_c4707___MHYLVFFPDDFVFIAHHLATFCVMASCRYYVGYGGLTVMSLLFLAEITSGCQNAWTLARIARLESSRIELIYKILSPLFYSFYTVVRDLLLHSYL--LPSSVLHTWKADDVIPRWLAYCWITIVVMAIFGSMAWILNLWIELFRYNARTYS
A9NT42_________________IYYMLINPSDYLFILHHIATSTYMSSCRYYTGHGGLSAICLMCTGEATSPFQNVWTLARMARGESPLASRIYTGMSTFFTVYFTIMR-CIVAPYLAWLLGSFYFPGKADKVIPRGIAYFWMFTVILAIVGSGIWVYKLWIGLIRFNAKKKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain