SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9239

Length: 382 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9239
TATGCCCTCCCAGCCAGTGGGAGCAGCCTGCACAGTCTCCGAGGGCAAGATATTTCTCATGGGCGGTTCTGTGAACGACGTTGCATCGTCCACCGTGTGGGTTTACAATTCACGTCACAACAGTGGGGGACTGCCCCTCGCATGAGGGTCCGCAGAGAATTCGCTGCAGCAGGAGCCATTGATGGCAAAATTTATGTATTGGGTGGGTGCCAGCCGAGCACTTGGGCAGGATCCACATCGTGGGCAGAAGTGTATGACCCCTGTAGTGAGGTCTGGAGCTCGATCTCCAGCCCACCCGAGATGAGGGAGAAGTGGATGCACGGGAACGCGGTACTGGAAGGCAGGCTTCTGGCAATGGCAGATAGGGGAGGAGTTGTGTTCG

Ace file of the UniGene biog2_v2.0_unigene9239 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11107	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box/kelch-repeat protein SKIP6 [Arabidopsis thaliana] sp\|Q9SJ04.1\|SKIP6_ARATH RecName: Full=F-box/kelch-repeat protein SKIP6; AltName: Full=SKP1-interacting partner 6 gb\|AAD20412.1\| SKP1 interacting partner 6 (SKIP6), putative [Arabidopsis thaliana] gb\|	-	-	1.0e-35	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	f-box kelch-repeat protein skip6	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	ligase activity	GO:0016874	Molecular Function	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA51

Fln msg: Overlapping hits, possible frame ERROR between 130 and 124, Distance to subject end: 131 aas, your sequence is shorter than subject: 127 - 352

Fln protein: MPSQPVGAACTVSEGKIFLMGGSVNDVASSTVWVYNSRHNxxxxAPRMRVRREFAAAGAIDGKIYVLGGCQPSTWAGSTSWAEVYDPCSEVWSSISSPPEMREKWMHGNAVLEGRLLAMADRGGVVF

Protein Length: 128

Fln nts: TATGCCCTCCCAGCCAGTGGGAGCAGCCTGCACAGTCTCCGAGGGCAAGATATTTCTCATGGGCGGTTCTGTGAACGACGTTGCATCGTCCACCGTGTGGGTTTACAATTCACGTCACAACxxxxxxxxxxxxGCCCCTCGCATGAGGGTCCGCAGAGAATTCGCTGCAGCAGGAGCCATTGATGGCAAAATTTATGTATTGGGTGGGTGCCAGCCGAGCACTTGGGCAGGATCCACATCGTGGGCAGAAGTGTATGACCCCTGTAGTGAGGTCTGGAGCTCGATCTCCAGCCCACCCGAGATGAGGGAGAAGTGGATGCACGGGAACGCGGTACTGGAAGGCAGGCTTCTGGCAATGGCAGATAGGGGAGGAGTTGTGTTCG

Fln Alignment:

biogeco2_mira_c4657___MPSQPVGAACTVSEGKIFLMGGSVNDVASSTVWVYNSRHNSxxTAPRMRVRREFAAAGAIDGKIYVLGGCQPSTWAGSTSWAEVYDPCSEVWSSISSPPEMREKWMHGNAVLEGRLLAMADRGGVVF
D5AA51_________________MPSQPVGAACTVSQGKIFLMGGSLNEVTSSTVWVYDSHHNGxxAAPRMRVRREFAAAGAIDGKIYVLGGCQPSTWAGSTSWVEVYDPCSEVWSSIPSPPEMREKWMHGNAVLEGKLLAMADRGGVVY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain