SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9190

Length: 571 nt

UniGene Fasta

>biog2_v2.0_unigene9190
ACTGCAGGCGCTACTGGACAGCGGGAGGAACCATGCGGAACATCCCCGTCGGCGCTGGCCGGAGAAGAGTAAGCATTTCACCGCGTTTCAGCTTCACAGTGGTTCGAAATCCCTCGATTTGCAAGAGTCCGAGGTGAAATCCGAGAATTTCGAAGAGCCGGTGAATGAGACGAGAATTTTCAGCTTCAACGATGAATCGACCAGCGTTTCTTCGGTTACCGGCGTAGCGGGGATCGACATGAAGGTTCCATACCTGGAAGAAATGGACGCTGCGATCTCCGATGGCTTCGTCAATTCTTTAACTGTCAATGGATTTTCTGGCGCAGGGTTTTCGAATTTAATGGATCCTGGTCTGAAAATAAAAGCGATTAGCACCGAAAATTCTCAATGGATTCCTGAAATCCAGCAAAATGGCAATTCAGCTCTTCTTGCCGATTGCTGTGTATTGTATGGTAAACCCATGTTCCCCAACTGCACACAGCGACCCGATGAATAAGGCTTTCTCGAAAAGCTATGTATATCTCGGCCATATTGGATTGCAGGCCATTTCCGCTTATTAAATTGAACTGAG

Ace file of the UniGene biog2_v2.0_unigene9190

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene249	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0T3_RICCO	-	-	2.0e-32	40%
FL-Next	tr=Dof domain zinc finger DNA-binding protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	81%
Blast2go	dof zinc finger protein	-	-	8.13057e-36	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	8.13057e-36	56%
Blast2go	DNA binding	GO:0003677	Molecular Function	8.13057e-36	56%

Source	InterPros	Term	Type	Identity
Sma3	Thiolase	IPR002155	-	-
Sma3	Zinc finger, Dof-type	IPR003851	-	-
Sma3	SWIRM domain	IPR007526	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q14DX9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 152 aas, your sequence is shorter than subject: 45 - 475

Fln protein: CRRYWTAGGTMRNIPVGAGRRRVSISPRFSFTVVRNPSICKSPR*

Protein Length: 46

Fln nts: ACTGCAGGCGCTACTGGACAGCGGGAGGAACCATGCGGAACATCCCCGTCGGCGCTGGCCGGAGAAGAGTAAGCATTTCACCGCGTTTCAGCTTCACAGTGGTTCGAAATCCCTCGATTTGCAAGAGTCCGAGGTGAAATCCGAGAATTTCGAAGAGCCGGTGAATGAGACGAGAATTTTCAGCTTCAACGATGAATCGACCAGCGTTTCTTCGGTTACCGGCGTAGCGGGGATCGACATGAAGGTTCCATACCTGGAAGAAATGGACGCTGCGATCTCCGATGGCTTCGTCAATTCTTTAACTGTCAATGGATTTTCTGGCGCAGGGTTTTCGAATTTAATGGATCCTGGTCTGAAAATAAAAGCGATTAGCACCGAAAATTCTCAATGGATTCCTGAAATCCAGCAAAATGGCAATTCAGCTCTTCTTGCCGATTGCTGTGTATTGTATGGTAAACCCATGTTCCCCAACTGCACACAGCGACCCGATGAATAAGGCTTTCTCGAAAAGCTATGTATATCTCGGCCATATTGGATTGCAGGCCATTTCCGCTTATTAAATTGAACTGAG

Fln Alignment:

biogeco2_mira_c4578___CRRYWTAGGTMRNIPVGAGRRR
Q14DX9_________________CQRYWTAGGTLRNVPVGAGRRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain