SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9147

Length: 569 nt

UniGene Fasta

>biog2_v2.0_unigene9147
ATGGGAACAAAAGGCTTCCGAGAAAAGGCTGCCGACCAGCAAGAACCGTCGCAACAGAACTATACTTATATCATTCTTCCAAAGAGCTGTGATCACTGCTGCACCGATACTTATTACTGGAGCGACGAGAACCCCAATGCCTGTTGCATTGTTTGAATTTCTTGATCCATCTTTTAATTTCAAGTCATAAATTTATATCCTTTAGTATTCACTTGATCTGCATCCTCAAAACGGCTTTGCCTTGCCTCATATGGATAGTGAAATAGCGTTTGGCGTATTAATTTAAGGGGAAATAGTGTTTGGCCTATTAATCTCAGCGGAAGATGTATCGACTAAAGATAAATGCGCGGATCTGCGGCCTTCTCGGACACAGATTTAAGTCTTTTCTCTGCACGAATTTTACAGCAATGCAGTAATTATGTTTTGTTCTTAAATTCAAATGCTGTACATATTACATAATATTGTTTGGTTATAATGATTTCTGGTACAAATTGAAGAAAGTAAAGTGCGCCATATGGACGATGTGTAGTTCTTTGTAATATTTAAATGCGACTGAAAAGCTTAAGCAA

Ace file of the UniGene biog2_v2.0_unigene9147

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16501	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00403, HMA, Heavy-metal-associated domain	-	-	2.0e-08	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	metal ion binding	-	-	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMX0

Fln msg: your sequence is shorter than subject: 52 - 156

Fln protein: MGTKGFREKAADQQEPSQQNYTYIILPKSCDHCCTDTYYWSDENPNACCIV*

Protein Length: 53

Fln nts: ATGGGAACAAAAGGCTTCCGAGAAAAGGCTGCCGACCAGCAAGAACCGTCGCAACAGAACTATACTTATATCATTCTTCCAAAGAGCTGTGATCACTGCTGCACCGATACTTATTACTGGAGCGACGAGAACCCCAATGCCTGTTGCATTGTTTGA___ATTTCTTGATCCATCTTTTAATTTCAAGTCATAAATTTATATCCTTTAGTATTCACTTGATCTGCATCCTCAAAACGGCTTTGCCTTGCCTCATATGGATAGTGAAATAGCGTTTGGCGTATTAATTTAAGGGGAAATAGTGTTTGGCCTATTAATCTCAGCGGAAGATGTATCGACTAAAGATAAATGCGCGGATCTGCGGCCTTCTCGGACACAGATTTAAGTCTTTTCTCTGCACGAATTTTACAGCAATGCAGTAATTATGTTTTGTTCTTAAATTCAAATGCTGTACATATTACATAATATTGTTTGGTTATAATGATTTCTGGTACAAATTGAAGAAAGTAAAGTGCGCCATATGGACGATGTGTAGTTCTTTGTAATATTTAAATGCGACTGAAAAGCTTAAGCAA

Fln Alignment:

biogeco2_mira_c4512___KGFREKAADQQEPSQQNYTYIILPKSCDHCCTDTYYWSDENPNACCIV
A9NMX0_________________KAPEKKAADKQEAPQQNFTYIILPTSCDH-SSYTYYWSDENPNSCCIV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
349		66	33		0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain