SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9098

Length: 540 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9098
GTTCAACTTACCTCCCCACAGAAGGGCTCAGTTACTTCTTCAAGAGATGGCTGGACTTACTTCCAGGCTATTCGAGGTTTCCAACAACAAGGCGGCATGGTTAACGGCTTACCGGGTTCGATTCCCACATTTCTTCAAGGGTCTTGCATTCCTCCGGAAGCAGCCGCGGCGACAACGACGAAAGAAATATTATCCATATTGGAATCGCACCAGAATCTCTTAGAGGAAGCCGTGACAGAGCTTCAAGAGATTCAGAAGATCGAGCAAGATAAGCAGGCCGTTGCTCAAGAGATTGCATCCAAGGATTCTGCAATGCGCGTTTTGCGAGGAAATTGCGTGATGCACAGCAGGTGTTGGAGCAAACCCTAGAAGATTACGAGGGTTACAGGATAGGTAAACGCTCAAAATCTTCGAATTCAAGTCCAGGTGATGCAGTAGGTCTCGGTCATTTGGAATTGAATGATATTTTGACATACGCACATAGAATAAGCTACACGACATTTGCACCGCCCGAATTTGGAGCTGAGAAAGCGCCCCTCC

Ace file of the UniGene biog2_v2.0_unigene9098 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13673	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Hydroxyproline-rich glycoprotein family protein n=3 Tax=Arabidopsis RepID=Q9LZ00_ARATH	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	hydroxyproline-rich glycoprotein family protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription from RNA polymerase II promoter	GO:0006357	Biological Process	0.0	66%
Blast2go	mediator complex	GO:0016592	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWT8

Fln msg: Overlapping hits, possible frame ERROR between 142 and 115, and overlapping frame ERROR between 321 and 321, Distance to subject end: 170 aas, your sequence is shorter than subject: 180 - 393

Fln protein: FNLPPHRRAQLLLQEMAGLTSRLFEVSNNKAAWLTAYxxxxxxxxxxxCIPPEAAAATTTKEILSILESHQNLLEEAVTELQEIQKIEQDKQAVAQEIASKDSAMxxxARKLRDAQQVLEQTLEDYEGYRIGKRSKSSNSSPGDAVGLGHLELNDILTYAHRISYTTFAPPEFGAEKAPL

Protein Length: 181

Fln nts: GTTCAACTTACCTCCCCACAGAAGGGCTCAGTTACTTCTTCAAGAGATGGCTGGACTTACTTCCAGGCTATTCGAGGTTTCCAACAACAAGGCGGCATGGTTAACGGCTTACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCATTCCTCCGGAAGCAGCCGCGGCGACAACGACGAAAGAAATATTATCCATATTGGAATCGCACCAGAATCTCTTAGAGGAAGCCGTGACAGAGCTTCAAGAGATTCAGAAGATCGAGCAAGATAAGCAGGCCGTTGCTCAAGAGATTGCATCCAAGGATTCTGCAATGCGxxxxxxTGCGAGGAAATTGCGTGATGCACAGCAGGTGTTGGAGCAAACCCTAGAAGATTACGAGGGTTACAGGATAGGTAAACGCTCAAAATCTTCGAATTCAAGTCCAGGTGATGCAGTAGGTCTCGGTCATTTGGAATTGAATGATATTTTGACATACGCACATAGAATAAGCTACACGACATTTGCACCGCCCGAATTTGGAGCTGAGAAAGCGCCCCTCC

Fln Alignment:

biogeco2_mira_c4428___FNLPPHRRAQLLLQEMAGLTSRLFEVSNNKAAWLTAYRxxxxxxxxxSCIPPEXXXXXXTKEILSILESHQNLLEEAVTELQEIQKIEQDKQAVAQEIASKDSAMRVFARKLRDAQQVLEQTLEDYEGYRIGKRSKSSNSSPGDAVGLGHLELNDILTYAHRISYTTFAPPEFGAEKAPL
A9NWT8_________________FNLPPYRRAQLLIHEMAGLTSRLFEVSNNRAAWLTAYRxxxxxxxxxSCIPPEAAAATTTKEILSILESHQNLLEEAVTELQEIQKIEQDKQAVAQEISSKDSAMRVFARKLHDAQQVLEQTLEDYEGYRIGKRSKSLNSSPGDAVGLGHLELNDILTYAHRISYTTFATPDFGAGKAPL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
217	33	66			0.997457
218	33	33			0.997721

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain