SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9088

Length: 358 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9088
TGGAAGGAGGCAGTGACAGACACAGAGAGGATATTCAGAGCCCCGTAAAATCTCTGTTCAGAAAGGAAGGGAATACATCAACAAGTATGTCCAACCCAGTTATGTTCAAAAGCCAGTTGCAGGAGTATACGCAGAAGCATTCTCTTTCTGCGCCTATATATGAGCATGTAAAGGAAGGACCTTCCATGAACCAAATTTTACAGCCACTGTAATTGTGAATGGAATAAGATATGATTCTCCAACAGCTTTTCGTAACCGCAAAACTGCAGAGCATGCAGCAGCTCAAGTTGCTCTTCAGGAATTGGGAAAGGCAGCAAATGGAGCAGGAGGCATTCCCAACCCAGAGTTTGAGTCAGGA

Ace file of the UniGene biog2_v2.0_unigene9088 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25311	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dsRNA-binding protein [Brassica oleracea var. gongylodes] emb\|CAD59428.1\| dsRNA-binding protein [Brassica oleracea var. gemmifera]	-	-	7.00649e-44	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	dsrna-binding protein	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ39

Fln msg: STOP codon was not found. Distance to subject end: 12 aas,

Fln protein: MILQQLFVTAKLQSMQQLKLLFRNWERQQMEQEAFPTQSLSQ

Protein Length: 43

Fln nts: TGGAAGGAGGCAGTGACAGACACAGAGAGGATATTCAGAGCCCCGTAAAATCTCTGTTCAGAAAGGAAGGGAATACATCAACAAGTATGTCCAACCCAGTTATGTTCAAAAGCCAGTTGCAGGAGTATACGCAGAAGCATTCTCTTTCTGCGCCTATATATGAGCATGTAAAGGAAGGACCTTCCATGAACCAAATTTTACAGCCACTGTAATTGTGAATGGAATAAGAT_-_ATGATTCTCCAACAGCTTTTCGTAACCGCAAAACTGCAGAGCATGCAGCAGCTCAAGTTGCTCTTCAGGAATTGGGAAAGGCAGCAAATGGAGCAGGAGGCATTCCCAACCCAGAGTTTGAGTCAGGA

Fln Alignment:

biogeco2_mira_c4410___MILQQLFVTAKLQSMQQLKLLFRNWERQQM--EQEAFPTQSLSQ
A9NZ39_________________MIPQQLFVIAKLQSMQQLKLLLRNWQTQQMEEEEEAFLTQCLSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain