SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9054

Length: 455 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9054
AGCGATTCTGAGTTGGATGATGGAGAAATTCCTGGTCATTCTTCTGGTTCTGGAGATAACATACAGAAAATGATGAGGACTTGTTTGGGAATGCCAGGAATAATAGTGAACAGTCTAGGGCTATCAAGGAGAGATCAAATTTTTCACAAGACAGATTAAATACAAATAATCAGTCTGATAAACTGGGCAAAAGTAATGCCTGGCCTAAATCTGGCTGCTATGATCCTCGGATACGTGAACCTACTTATAGCAATGCAGATCGTGCCTGTTGGTGGGAACTGACAGCTTTGGCATCTCATTTTCACCCATCAGTAGCAACAATGGCTCGAACTCTTCTTTTAGGTGCCAATATTGTATATAATGGTGATCCTCTAACTGACCTATCACTGGGAGCTTTCATTGATAGATTTATCGAGAAAAAACCAAGGCTAACAAGAAATCATCTGGAGAGTGGC

Ace file of the UniGene biog2_v2.0_unigene9054 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene445	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	CCAAT/enhancer binding protein zeta [Bos taurus]	-	-	35%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	53%
Blast2go	ccaat enhancer-binding protein zeta-like	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	polar nucleus fusion	GO:0010197	Biological Process	0.0	64%
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding factor	IPR005612	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RGN9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 278 aas, your sequence is shorter than subject: 151 - 1239

Fln protein: RF*VG*WRNSWSFFWFWR*HTENDEDLFGNARNNSEQSRAIKERSNFSQDRLNTNNQSDKLGKSNAWPKSGCYDPRIREPTYSNADRACWWELTALASHFHPSVATMARTLLLGANIVYNGDPLTDLSLGAFIDRFIEKKPRLTRNHLESG

Protein Length: 152

Fln nts: AGCGATTCTGAGTTGGATGATGGAGAAATTCCTGGTCATTCTTCTGGTTCTGGAGATAACATACAGAAAATGATGAGGACTTGTTTGGGAATGCCAGGAATAATAGTGAACAGTCTAGGGCTATCAAGGAGAGATCAAATTTTTCACAAGACAGATTAAATACAAATAATCAGTCTGATAAACTGGGCAAAAGTAATGCCTGGCCTAAATCTGGCTGCTATGATCCTCGGATACGTGAACCTACTTATAGCAATGCAGATCGTGCCTGTTGGTGGGAACTGACAGCTTTGGCATCTCATTTTCACCCATCAGTAGCAACAATGGCTCGAACTCTTCTTTTAGGTGCCAATATTGTATATAATGGTGATCCTCTAACTGACCTATCACTGGGAGCTTTCATTGATAGATTTATCGAGAAAAAACCAAGGCTAACAAGAAATCATCTGGAGAGTGGC

Fln Alignment:

biogeco2_mira_c4362___GNARNNSEQSRAIKERSNFSQDRLNTNNQSDKLGKSN-AWPKSGCYDPRIREPTYSNADRACWWELTALASHFHPSVATMARTLLLGANIVYNGDPLTDLSLGAFIDRFIEKKPR
A9RGN9_________________GTTIASRSQSKKSLVRKNVSQPSAKVSEESTSIEPGQKTWPLKGYYDSKHRDPSHCNADKACWWELSALAMHMHPSVASMARTLLSGANVVYSGDPLRDLVLGAFLDRFAEKKPK

SNPs (tot: 3)

Position	C %	G %	T %	Probability
314	33		66	0.997452
335	33		66	0.997452
336	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain