SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9027

Length: 466 nt

UniGene Fasta

>biog2_v2.0_unigene9027
AAGGTTTCCTGCTCAGGTTCGCATACGCACGCGGAAAATTTGCAAGGCATTGGAAGAAGATGCATTCAGGCCCATCCTCCATCATTATGATGGTCCAAAGTTTCGGTTGCAGCTGAATGTTCCAGAGACACTGGCACTCCTGGATATCTGTAGCGAGAATGGACCCCCATAAATAGCACAATGCTTTTATGGTGCCATGAAAAAGTCTTATAATGCGGTATGTTACAGTAAGTATTACATATGAATTTTGGGCTCTGAATCCTCAGATAATGTTTTGTAAAACTGGGGCCGCTCATCCTTCAGAGGACCGATGACGCCATTTTGACTGCTGTATAAATTTCTATCGCTGGGGATTGAAGTTGAGATGTATACATAGTTTAGCTCATGAATTATCATCATGGCAGCTATATAATATTATAGGAGGGAGTATTTAACCTGCTTTCTGTGGACACTCTTCCAGTAGGAA

Ace file of the UniGene biog2_v2.0_unigene9027

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21673	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	DCD (Development and Cell Death) domain protein [Arabidopsis thaliana] dbj\|BAB01090.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL24231.1\| AT3g27090/MOJ10_18 [Arabidopsis thaliana] gb\|AAM65351.1\| AT3g27090/MOJ10_18 [Arabidopsis thaliana] gb\|AEE7	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	dcd (development and cell death) domain protein	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD32

Fln msg: your sequence is shorter than subject: 57 - 294

Fln protein: RFPAQVRIRTRKICKALEEDAFRPILHHYDGPKFRLQLNVPETLALLDICSENGPP*

Protein Length: 58

Fln nts: AAGGTTTCCTGCTCAGGTTCGCATACGCACGCGGAAAATTTGCAAGGCATTGGAAGAAGATGCATTCAGGCCCATCCTCCATCATTATGATGGTCCAAAGTTTCGGTTGCAGCTGAATGTTCCAGAGACACTGGCACTCCTGGATATCTGTAGCGAGAATGGACCCCCATAA___ATAGCACAATGCTTTTATGGTGCCATGAAAAAGTCTTATAATGCGGTATGTTACAGTAAGTATTACATATGAATTTTGGGCTCTGAATCCTCAGATAATGTTTTGTAAAACTGGGGCCGCTCATCCTTCAGAGGACCGATGACGCCATTTTGACTGCTGTATAAATTTCTATCGCTGGGGATTGAAGTTGAGATGTATACATAGTTTAGCTCATGAATTATCATCATGGCAGCTATATAATATTATAGGAGGGAGTATTTAACCTGCTTTCTGTGGACACTCTTCCAGTAGGAA

Fln Alignment:

biogeco2_mira_c4323___RFPAQVRIRTRKICKALEEDAFRPILHHYDGPKFRLQLNVPETLALLDICSENGPP
D5AD32_________________RFPAQVRIRTRKLCKALEEDAFRPVLHHYDGPKFRLQLNVPETLALMDICNENGPP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
271		33		66	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain