SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8998

Length: 275 nt

UniGene Fasta

>biog2_v2.0_unigene8998
TTTTTGTTGCTCTTGCATTTTTCCTAAAGAGTCATGTTTCTGCAGATTCTCAGTTTGAAACCTTCTTTAGCGTTTTGGCCTTAACTAGTTTATTGGTTTACATCATCACGTTCTCTCTCGGTATGGGACCCATCCCATGGATTATTATGTCCGAGATTCTTCCAGCCAGCATGAAAGGTTTTGCTGGTAGCGTAGCAACTTTAGGAAATTGGTTGGCATCTTGGGCTGTGACAATGACGATTAATATTATGTTGGAGTGGAGTTCTACAGGGACA

Ace file of the UniGene biog2_v2.0_unigene8998

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2466	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Putative ERD6-like transporter (Fragment) n=2 Tax=Vitis vinifera RepID=D7SPD1_VITVI	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	sugar transporter erd6-like 6	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	80%
Blast2go	carbohydrate transport	GO:0008643	Biological Process	80%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	80%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	80%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACF7

Fln msg: Distance to subject end: 35 aas, your sequence is shorter than subject: 91 - 185

Fln protein: FVALAFFLKSHVSADSQFETFFSVLALTSLLVYIITFSLGMGPIPWIIMSEILPASMKGFAGSVATLGNWLASWAVTMTINIMLEWSSTGT

Protein Length: 92

Fln nts: TTTTTGTTGCTCTTGCATTTTTCCTAAAGAGTCATGTTTCTGCAGATTCTCAGTTTGAAACCTTCTTTAGCGTTTTGGCCTTAACTAGTTTATTGGTTTACATCATCACGTTCTCTCTCGGTATGGGACCCATCCCATGGATTATTATGTCCGAGATTCTTCCAGCCAGCATGAAAGGTTTTGCTGGTAGCGTAGCAACTTTAGGAAATTGGTTGGCATCTTGGGCTGTGACAATGACGATTAATATTATGTTGGAGTGGAGTTCTACAGGGACA

Fln Alignment:

biogeco2_mira_c4276___VALAFFLKSHVSADSQFETFFSVLALTSLLVYIITFSLGMGPIPWIIMSEILPASMKGFAGSVATLGNWLASWAVTMTINIMLEWSSTGT
D5ACF7_________________VSLAFYLKSHLVGDSHLVMFTSILAVTSLLVYIVSFSLGIGGVPWVIMSEILPVNVKGLAGSVATLANWSSSWLVTMTINLLLEWSKAGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain