SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8976

Length: 515 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8976
ATGGGGATGGTGACTTCCTTGGAGGTCGATATCGATAGTGCTTGTTCCAGTAACCCTAACGATTCCATTGATGCGCTGAAATCAAAAATTGCTTCCCATCCTCACTATCCTCAGCTGTTGGCAGCTTACATGGATTGCCAGAAGGTTGGGGCTCCTCCAGAAGTTGTCACAGTACTGGATGAGATTATTCAGGAGAATCAGCTTGGACGCCATTCGGGAACTATGGATATAGGAGTGGATCCGGAGCTTGATCAATTCATGGAGGCCTACTGCCAGATGTTGATCAAGTACCATTTAGAACTAACGAAGCCATTCAAAGAAGCGAGAACGTTTCTGAACAAGATGGAGACACAGCTAAATTGCTTGAGTAAAGGAGCTATCAGGAGTTTCCCTTCAGGCTACTGCGACGAAAGGGAAGATGGAGGTGGATCCTCGGAAGAGGAGTTCAGCTGTGGCGAAATCGAAGTTCACGAAGTTGATCCGCGTGCGGAAGATAGGGAATTGAAAGATCAACT

Ace file of the UniGene biog2_v2.0_unigene8976 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3932	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox transcription factor KN4 n=1 Tax=Picea mariana RepID=Q5SC62_PICMA	-	-	83%
FL-Next	tr=Homeobox transcription factor KN4; Picea mariana (Black spruce) (Abies mariana).	-	-	95%
Blast2go	homeobox transcription factor kn4	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	75%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	75%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	75%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	ELK	IPR005539	-	-
Sma3	KNOX1	IPR005540	-	-
Sma3	KNOX2	IPR005541	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q5SC62

Fln msg: Distance to subject end: 104 aas, your sequence is shorter than subject: 171 - 438

Fln protein: MGMVTSLEVDIDSACSSNPNDSIDALKSKIASHPHYPQLLAAYMDCQKVGAPPEVVTVLDEIIQENQLGRHSGTMDIGVDPELDQFMEAYCQMLIKYHLELTKPFKEARTFLNKMETQLNCLSKGAIRSFPSGYCDEREDGGGSSEEEFSCGEIEVHEVDPRAEDRELKDQ

Protein Length: 172

Fln nts: ATGGGGATGGTGACTTCCTTGGAGGTCGATATCGATAGTGCTTGTTCCAGTAACCCTAACGATTCCATTGATGCGCTGAAATCAAAAATTGCTTCCCATCCTCACTATCCTCAGCTGTTGGCAGCTTACATGGATTGCCAGAAGGTTGGGGCTCCTCCAGAAGTTGTCACAGTACTGGATGAGATTATTCAGGAGAATCAGCTTGGACGCCATTCGGGAACTATGGATATAGGAGTGGATCCGGAGCTTGATCAATTCATGGAGGCCTACTGCCAGATGTTGATCAAGTACCATTTAGAACTAACGAAGCCATTCAAAGAAGCGAGAACGTTTCTGAACAAGATGGAGACACAGCTAAATTGCTTGAGTAAAGGAGCTATCAGGAGTTTCCCTTCAGGCTACTGCGACGAAAGGGAAGATGGAGGTGGATCCTCGGAAGAGGAGTTCAGCTGTGGCGAAATCGAAGTTCACGAAGTTGATCCGCGTGCGGAAGATAGGGAATTGAAAGATCAACT

Fln Alignment:

biogeco2_mira_c4241___MVTSLEVDIDSACSSNPNDSIDALKSKIASHPHYPQLLAAYMDCQKVGAPPEVVTVLDEIIQENQLGRHSGTMDIGVDPELDQFMEAYCQMLIKYHLELTKPFKEARTFLNKMETQLNCLSKGAIRSFPSGYCDXXXXXXXXXXXXXXXXXXEVHEVDPRAEDRELKDQ
Q5SC62_________________MVTSLEVDIDSACSSNPNDSIDTLKTKIACHPHYPQLLAAYMDCQKIGAPPEVVTVLDEISQENQLGRHLATMDIGVDPELDQFMEAYCQMLIKYHLELSKPFKEARTFLNKMETQLNCLSKGAIRSFPSGYCDEREDGGGSSEEEFSCGEIEVHEVDPRAEDRELKDQ

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
193		25	75		0.996473
194		25		75	0.996473
195		25		75	0.996473
196	25	75			0.996473
245		25		75	0.996473
251	75	25			0.996473
252		25	75		0.996473
253		25		75	0.996473
255			75	25	0.996473
320	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain