SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8969

Length: 257 nt

UniGene Fasta

>biog2_v2.0_unigene8969
ATGGGGACTTTGAGGAAGCTGAGGCAGAGGCAACTAAAGCTAAAGGAAGTGAAGCTTCTCAAAAGAGAAAAGCATCAGCTGAAGTAGCAGCAAAGGAGGCAGCAAGTTATAATTGGAGTGAACTTGCAGACACGGGAAAGCTGAAGGACTTGACTGTGGTTGAATTAAAATATTATTTGACTGCTCAGAATCTGCCAGTTACTGGCAAAAAAGAATCTTGATCAACAGAATCTTGACACATTTGGGAAAATGAAGTC

Ace file of the UniGene biog2_v2.0_unigene8969

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene263	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Ku70 homolog [Populus nigra]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	atp-dependent dna helicase 2 subunit ku70	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	telomere maintenance	GO:0000723	Biological Process	79%
Blast2go	response to heat	GO:0009408	Biological Process	79%
Blast2go	double-strand break repair via nonhomologous end joining	GO:0006303	Biological Process	79%
Blast2go	double-stranded DNA binding	GO:0003690	Molecular Function	79%
Blast2go	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	DNA-dependent protein kinase-DNA ligase 4 complex	GO:0005958	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Ku70/Ku80 C-terminal arm	IPR005160	-	-
Sma3	Ku70/Ku80, N-terminal alpha/beta	IPR005161	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	DNA helicase, ATP-dependent, Ku type	IPR006164	-	-
Sma3	DNA helicase, ATP-dependent, Ku70 subunit	IPR006165	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMC2

Fln msg: Overlapping hits, possible frame ERROR between 215 and 206, your sequence is shorter than subject: 84 - 630

Fln protein: GDFEEAEAEATKAKGSEASQKRKASAEVAAKEAASYNWSELADTGKLKDLTVVELKYYLTAQNLPVTxxxxxLINRILTHLGK*

Protein Length: 85

Fln nts: ATGGGGACTTTGAGGAAGCTGAGGCAGAGGCAACTAAAGCTAAAGGAAGTGAAGCTTCTCAAAAGAGAAAAGCATCAGCTGAAGTAGCAGCAAAGGAGGCAGCAAGTTATAATTGGAGTGAACTTGCAGACACGGGAAAGCTGAAGGACTTGACTGTGGTTGAATTAAAATATTATTTGACTGCTCAGAATCTGCCAGTTACTxxxxxxxxxxxxxxxTTGATCAACAGAATCTTGACACATTTGGGAAAATGAAGTC

Fln Alignment:

biogeco2_mira_c4230___QKRXXXXXXXXXXXXXYNWSELADTGKLKDLTVVELKYYLTAQNLPVTGxxxILINRILTHLGK
B8LMC2_________________QKRKASAEVAAKEAASYNWSELADMGKLKDLTVVELKYYLTAHNLPVTGxxxVLINRIFTHLGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain