SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8964

Length: 405 nt

UniGene Fasta

>biog2_v2.0_unigene8964
ATGGGGGACATATCCATATCCTTTCTTAATGCGCGCATCTAACAATCCCAGTGAACGTTCCAGCGCCGCGGCGGAGCTCAGTCGTCCTGTTGGTGGTGGTGGTGGGGGGTTTATGGCACCGGTCTCGACATCGACCCTATTTGCAAACCTGTTAAGCTCGGGAAGCGTGCAGGCGGCACATACCCCTCCCGGATTCTCTGAACTGATTGGAGCTATGACTAGAGGAGGAAACGGTAGTATGGGTACCAGTACTAGTTCTGCTACCAGTACTGCTGCACCTGCCATGTTTTCAACAGCAATTCCAGCCATTTTCAGCCATCCATAACCACCACCGGTCCACCATCAGCAACACCAACATAATAACACCGCCACGGCTCAGATGTCCGCCACGGCCCTGTTGCGAAG

Ace file of the UniGene biog2_v2.0_unigene8964

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9796	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	unknown [Picea sitchensis]	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	86%
Blast2go	intracellular	GO:0005622	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP08

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 134 - 698

Fln protein: WGTYPYPFLMRASNNPSERSSAAAELSRPVGGGGGGFMAPVSTSTLFANLLSSGSVQAAHTPPGFSELIGAMTRGGNGSMGTSTSSATSTAAPAMFSTAIPAIFSHP*PPPVHHQQHQHNNTATAQMSATALLR

Protein Length: 135

Fln nts: ATGGGGGACATATCCATATCCTTTCTTAATGCGCGCATCTAACAATCCCAGTGAACGTTCCAGCGCCGCGGCGGAGCTCAGTCGTCCTGTTGGTGGTGGTGGTGGGGGGTTTATGGCACCGGTCTCGACATCGACCCTATTTGCAAACCTGTTAAGCTCGGGAAGCGTGCAGGCGGCACATACCCCTCCCGGATTCTCTGAACTGATTGGAGCTATGACTAGAGGAGGAAACGGTAGTATGGGTACCAGTACTAGTTCTGCTACCAGTACTGCTGCACCTGCCATGTTTTCAACAGCAATTCCAGCCATTTTCAGCCATCCATAACCACCACCGGTCCACCATCAGCAACACCAACATAATAACACCGCCACGGCTCAGATGTCCGCCACGGCCCTGTTGCGAAG

Fln Alignment:

biogeco2_mira_c4223___GTYPYPFLMRASNNPXXXXXXXXXXXXPVXXXXXX----FMAPVSTSTLFANLLSSGSVQAAHTPPGFSELIGAMTRGGNGSMGXXXXXXXXXXXXXXXXXXIPAIFSXXXXXXXXXXXXXXNNTATAQMSATALLR
B8LP08_________________GTYPYPFLMRASNNPSERSAAAAELGRPTGGGGGGGGRGFMAPASASSLFASLLASGGLPAAQTPTGFSELIGAMTRGGNGSIS-TSTSSATTAAPAVFSTGIPAIFS--HPQPPQVHHQQHNNTATAQMSATALLQ

SSRs (tot: 1)

Start position	End position	Sequence	Length
91	105	TGG TGG TGG TGG TGG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain