SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8952

Length: 522 nt

UniGene Fasta

>biog2_v2.0_unigene8952
ATGGAATTGAAGATGTGGCAATTAAGATCTCAGATGAAGGTGGTGGAATACCAAGAAGTGGGCTACCCAATATATTTACATATCTATACAGTACTGCAGAAAGCCCGGTATCTGAAGAAGTAAGTATGGCTGGCTATGGGTATGGGCTTCCAATTAGTCGTCTTTATGCAAGATACTTTGGCGGTGATTTGCAAGTCATATCAATGGAGGGATATGGTACAGATGCCTATCTTCACTTAAGTCGGCTCGGCAACAGCCAAGAACCGTTGCCTTAGAAGCCATACAGATTCAAAACATAACTTGTGCTTTTAGTTAGTACCATAATTATATTTATGTATGGTAATATTGGTATCAGCAATATCAAATTCCACATGCTTTTGGCAGTGTTATTTAGTTTCTTGATCTTGAATGATCACTTCAAAGGCATGCAAATAATTTAGGACTATTTCTTACACTAGGGTNTATACCTGTAAACGTTGGCAATTCAATGATTAAAGCAGTAAAGTGACATTATTTATATTT

Ace file of the UniGene biog2_v2.0_unigene8952

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10908	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial pyruvate dehydrogenase kinase [Brassica napus] gb\|ABA25868.1\| mitochondrial pyruvate dehydrogenase kinase [Brassica napus]	-	-	76%
FL-Next	tr=cDNA clone:J023007C01, full insert sequence; Oryza sativa subsp. japonica (Rice).	-	-	82%
Blast2go	pyruvate dehydrogenase kinase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Pyruvate dehydrogenase (acetyl-transferring)] kinase.	EC:2.7.11.2	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	87%
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	87%
Blast2go	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	87%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	pyruvate dehydrogenase (acetyl-transferring) kinase activity	GO:0004740	Molecular Function	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B7EFZ2

Fln msg: your sequence is shorter than subject: 91 - 255

Fln protein: GIEDVAIKISDEGGGIPRSGLPNIFTYLYSTAESPVSEEVSMAGYGYGLPISRLYARYFGGDLQVISMEGYGTDAYLHLSRLGNSQEPLP*

Protein Length: 92

Fln nts: ATGGAATTGAAGATGTGGCAATTAAGATCTCAGATGAAGGTGGTGGAATACCAAGAAGTGGGCTACCCAATATATTTACATATCTATACAGTACTGCAGAAAGCCCGGTATCTGAAGAAGTAAGTATGGCTGGCTATGGGTATGGGCTTCCAATTAGTCGTCTTTATGCAAGATACTTTGGCGGTGATTTGCAAGTCATATCAATGGAGGGATATGGTACAGATGCCTATCTTCACTTAAGTCGGCTCGGCAACAGCCAAGAACCGTTGCCTTAG___AAGCCATACAGATTCAAAACATAACTTGTGCTTTTAGTTAGTACCATAATTATATTTATGTATGGTAATATTGGTATCAGCAATATCAAATTCCACATGCTTTTGGCAGTGTTATTTAGTTTCTTGATCTTGAATGATCACTTCAAAGGCATGCAAATAATTTAGGACTATTTCTTACACTAGGGTaTATACCTGTAAACGTTGGCAATTCAATGATTAAAGCAGTAAAGTGACATTATTTATATTT

Fln Alignment:

biogeco2_mira_c4204___GIEDVAIKISDEGGGIPRSGLPNIFTYLYSTAESPV-----SEEVSMAGYGYGLPISRLYARYFGGDLQVISMEGYGTDAYLHLSRLGNSQEPLP
B7EFZ2_________________GAEDVTIKVSDEGGGIPRSGLPRIFTYLYSTAKNPPDMDCPSEGVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSEEPLP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
178	33			66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain