SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8940

Length: 421 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8940
TATGAAGAGATTACAGGCTTGGCCAAGCCATGATTAAACGTTGTGTACGTCTTGATGGGTTGACTGATGCCATAGATATAGTTGGCACTGGTGGTGATGGTGCGAACACTGTAAACATTTCAACAGGTGCATGCATATTAGCTGCAGCATGTGGTGCCCGAGTAGCAAAGCAAGGAAATCGTTCAAGTTCCTCTGCATGTGGAAGTGCAGATGTGCTGCAAGCTCTGGGAGTTGCTCTAGACTTGGGACCTGAGGGAGTCAAACAATGTGTCAGGGAGGTTGGAATTGGTTTCATTATGGCTCCAAGATACCATCCAGCGATGAAACTTGTGGCTCCAGTGAGAAAGGCCCTTAAAGTAAAGACAGTTTTCAATATTTTAGGCCCCATGCTGAATACCCGGCCAAGGGTTCGATTATGCAG

Ace file of the UniGene biog2_v2.0_unigene8940 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene220	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoribosylanthranilate transferase [Arabidopsis thaliana] gb\|AAO42464.1\| phosphorybosyl anthranilate transferase 1 [Arabidopsis thaliana]	-	-	68%
FL-Next	sp=Anthranilate phosphoribosyltransferase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	anthranilate phosphoribosyltransferase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Anthranilate phosphoribosyltransferase.	EC:2.4.2.18	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	81%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	81%
Blast2go	Biosynthesis of plant hormones	01070	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	81%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	81%
Blast2go	response to salt stress	GO:0009651	Biological Process	81%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	81%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	81%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	81%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	81%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	81%
Blast2go	double-stranded telomeric DNA binding	GO:0003691	Molecular Function	81%
Blast2go	anthranilate phosphoribosyltransferase activity	GO:0004048	Molecular Function	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 3	IPR000312	-	-
Sma3	Anthranilate phosphoribosyl transferase	IPR005940	-	-
Sma3	Glycosyl transferase, family 3, N-terminal	IPR017459	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q02166

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 148 aas, your sequence is shorter than subject: 139 - 444

Fln protein: *RDYRLGQAMIKRCVRLDGLTDAIDIVGTGGDGANTVNISTGACILAAACGARVAKQGNRSSSSACGSADVLQALGVALDLGPEGVKQCVREVGIGFIMAPRYHPAMKLVAPVRKALKVKTVFNILGPMLNTRPRVRLC

Protein Length: 140

Fln nts: TATGAAGAGATTACAGGCTTGGCCAAGCCATGATTAAACGTTGTGTACGTCTTGATGGGTTGACTGATGCCATAGATATAGTTGGCACTGGTGGTGATGGTGCGAACACTGTAAACATTTCAACAGGTGCATGCATATTAGCTGCAGCATGTGGTGCCCGAGTAGCAAAGCAAGGAAATCGTTCAAGTTCCTCTGCATGTGGAAGTGCAGATGTGCTGCAAGCTCTGGGAGTTGCTCTAGACTTGGGACCTGAGGGAGTCAAACAATGTGTCAGGGAGGTTGGAATTGGTTTCATTATGGCTCCAAGATACCATCCAGCGATGAAACTTGTGGCTCCAGTGAGAAAGGCCCTTAAAGTAAAGACAGTTTTCAATATTTTAGGCCCCATGCTGAATACCCGGCCAAGGGTTCGATTATGCAG

Fln Alignment:

biogeco2_mira_c4186___LGQAMIKRCVRLDGLTDAIDIVGTGGDGANTVNISTGACILAAACGARVAKQGNRSSSSACGSADVLQALGVALDLGPEGVKQCVREVGIGFIMAPRYHPAMKLVAPVRKALKVKTVFNILGPMLN
Q02166_________________LARAMMKHARKVEGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVVLDLGPEGIKRCVEEGGIGFMMSPMYHPAMKIVGPVRKKLKIKTVFNILGPMLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain