SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8926

Length: 712 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene8926 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16576	7/8
SustainPine v2.0	sp_v2.0_unigene61169	1/8

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	unknown [Picea sitchensis]	-	-	65%

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
62		25		75	0.996473
65	50		50		1.0
73	75		25		0.996473
98	66	33			0.997452
142		80		20	0.995493
143	80		20		0.995493
159		60	40		1.0
164	16		83		0.994513
169			33	66	1.0
184	14		85		0.993533
196	57	14	28		1.0
197		85	14		0.993533
203		71		28	1.0
211	14	85			0.993533
217		71		28	1.0
218		28	71		1.0
257			14	85	0.993533
269		85	14		0.993533
284		33	66		1.0
286		85		14	0.993533
290	42		57		1.0
295		14	85		0.993533
312	85		14		0.993533
333	33		66		1.0
345	42	42			1.0
352			42	57	1.0
364	75		25		0.996473
374		80	20		0.995493
385	16		83		0.994512
399			40	60	1.0
406		60		40	1.0
421	60		40		1.0
426		75		25	0.996473
437	25		75		0.996473
451			75	25	0.996473
458		25		75	0.996473
459		25	75		0.996473
468		66	33		0.997452
503		33	66		0.997453
504	33			66	0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain