SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8912

Length: 476 nt

UniGene Fasta

>biog2_v2.0_unigene8912
ATGGGAGACAAAATCGCAAGAGTTTTAAAACCAGTGTCATATCAATTAACAGTGATGGTCAGGTTATTCCAGATAAAGCTCTTTTGCTTTTAATTACTTGGGATTCAGATTGATTTTGCCCTCGTTCAAACAACGAGCTTTGATTTGCAGCAGGTGAAGGGTAGGGTTTCATTGATGTTGCAGATGAGACGAGAATAAGATGCTTTTGTTTCAACGTAATCCGATGTCTTCCGCAGATTTGTAGATGAGATATTGTGCCGAAGGAGGAGCGAAGAGGATTAATACTGCGGTGGTTCAAACAAGCCTCCAACTCACACATTCTTCTCCCGGACACAGAAGTCCATTTTCTGTACATCATACTCTCTGTAGGGTTCACCATCAGACATGGGGAAATCAAAGAAGACTCCTAAGTTTGCCAAGATGAAAAGTATTATCAGCGCCAAAGCGATCCGGAAATATAAGGAAGAGGTGCTTAA

Ace file of the UniGene biog2_v2.0_unigene8912

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene61429	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	PIN domain-containing protein [Arabidopsis thaliana] gb\|AAK32937.1\|AF367351_1 At2g46230/T3F17.12 [Arabidopsis thaliana] gb\|AAL15401.1\| At2g46230/T3F17.12 [Arabidopsis thaliana] gb\|AAC62883.2\| expressed protein [Arabidopsis thaliana] gb\|AEC10662.1\| PIN dom	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide binding protein, PINc	IPR006596	-	0.0	-
Sma3	Protein of unknown function DUF652	IPR006984	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Q4

Fln msg: Distance to subject end: 167 aas, your sequence is shorter than subject: 30 - 198

Fln protein: MGKSKKTPKFAKMKSIISAKAIRKYKEEVL

Protein Length: 31

Fln nts: ATGGGAGACAAAATCGCAAGAGTTTTAAAACCAGTGTCATATCAATTAACAGTGATGGTCAGGTTATTCCAGATAAAGCTCTTTTGCTTTTAATTACTTGGGATTCAGATTGATTTTGCCCTCGTTCAAACAACGAGCTTTGATTTGCAGCAGGTGAAGGGTAGGGTTTCATTGATGTTGCAGATGAGACGAGAATAAGATGCTTTTGTTTCAACGTAATCCGATGTCTTCCGCAGATTTGTAGATGAGATATTGTGCCGAAGGAGGAGCGAAGAGGATTAATACTGCGGTGGTTCAAACAAGCCTCCAACTCACACATTCTTCTCCCGGACACAGAAGTCCATTTTCTGTACATCATACTCTCTGTAGGGTTCACCATCAGAC_-_ATGGGGAAATCAAAGAAGACTCCTAAGTTTGCCAAGATGAAAAGTATTATCAGCGCCAAAGCGATCCGGAAATATAAGGAAGAGGTGCTTAA

Fln Alignment:

biogeco2_mira_c4136___MGKSKKTPKFAKMKSIISAKAIRKYKEEVL
D5A9Q4_________________MGKSKKTPKFAKMKSIISSKAIKKYKEEVL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
383	33		66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain