SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8907

Length: 449 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8907
GGTACTGGAGTTGGTTTTACTCCCAAGATTTTAGACCTGGATATCCTTGATGGAGTGATAGAGGTATCCAGTGATGATGCTATAAAAATGGCGCGAGAGCTAGCTACGAAGGAAGGCCTCATGGTTGGAATTTCTTCTGGTGCCAACACAGTTGCAGCAATTCAATTAGCCAAAAGGCCAGAGAATAAAACAACTTATAGTGACTGTACATCCAAGCTTTGGAGAACGATACCTATCATCTGTTTATCTCAAGAATTGAGAAATGAAGCGGAAATGATGCAACCGGTGTCAGTGGATTGATCATCTTAAAGTCACCTGTGCTTCATTCATATCCTGATTCTCATGGATATATTTTGATAATTAAGACTTATCAAATTTGATTTTCCAAATTTGGTTATACTTTGAGAATAGTTTAATTGTATTAATAGCACGTTTCTCTGTATTATAAG

Ace file of the UniGene biog2_v2.0_unigene8907 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8057	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine synthase n=2 Tax=Picea sitchensis RepID=B8LQB8_PICSI	-	-	81%
FL-Next	sp=Cysteine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	beta-cyanoalanine synthase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cysteine synthase.	EC:2.5.1.47	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Cysteine and methionine metabolism	00270	87%
Blast2go	Sulfur metabolism	00920	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	cysteine biosynthetic process from serine	GO:0006535	Biological Process	87%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	87%
Blast2go	cysteine synthase activity	GO:0004124	Molecular Function	87%
Blast2go	transferase activity	GO:0016740	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR69

Fln msg: your sequence is shorter than subject: 100 - 307

Fln protein: GTGVGFTPKILDLDILDGVIEVSSDDAIKMARELATKEGLMVGISSGANTVAAIQLAKRPENKTTYSDCTSKLWRTIPIICLSQELRNEAEMMQPVSVD*

Protein Length: 101

Fln nts: GGTACTGGAGTTGGTTTTACTCCCAAGATTTTAGACCTGGATATCCTTGATGGAGTGATAGAGGTATCCAGTGATGATGCTATAAAAATGGCGCGAGAGCTAGCTACGAAGGAAGGCCTCATGGTTGGAATTTCTTCTGGTGCCAACACAGTTGCAGCAATTCAATTAGCCAAAAGGCCAGAGAATAAAACAACTTATAGTGACTGTACATCCAAGCTTTGGAGAACGATACCTATCATCTGTTTATCTCAAGAATTGAGAAATGAAGCGGAAATGATGCAACCGGTGTCAGTGGATTGA___TCATCTTAAAGTCACCTGTGCTTCATTCATATCCTGATTCTCATGGATATATTTTGATAATTAAGACTTATCAAATTTGATTTTCCAAATTTGGTTATACTTTGAGAATAGTTTAATTGTATTAATAGCACGTTTCTCTGTATTATAAG

Fln Alignment:

biogeco2_mira_c4131___GTGVGFTPKILDLDILDGVIEVSSDDAIKMARELATKEGLMVGISSGANTVAAIQLAKRPENK-----TTYSDCTSKLWRTIPIICLSQELRNEAEMMQPVSVD
A9NR69_________________GTGVGFTPKILDLDILDGVIEVSSDDALKMARELAWKEGLMVGISSGANTVAALQLARRPENKNKLIVTVHPSFGERYLSSM----LFQELRQEAEMMQPVSVD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
282			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain