SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8903

Length: 300 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8903
TGTGCTGGTGACGCTCAAGAATCTACTGCAAAAGTATGTGAAATGTCGTAATTTATTGGAAAACGATGGTGGAGGTGGCTCAATTGGTGGTACTGTAGCGAGATATCAACCTGAGGCCTCAGACCCTGAGTTAAGTGGAGCTCTTTCTTCAATCTTATGGGAGTTGGCCTTGCTATCAAAGCATTATCATCCAGCTGTTTCTGAATTGGCTGACAATATTGCTAGCATGAGCATGTCTCATAATTCAGCTGTTCTTTCAACTCTTTCTCCACCAGATGCCTTCAGGACCTATTCAACAAA

Ace file of the UniGene biog2_v2.0_unigene8903 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5677	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	nucleolar complex-associated protein domain-containing protein [Arabidopsis thaliana] gb\|AEE36209.1\| nucleolar complex-associated protein domain-containing protein [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	64%
Blast2go	nucleolar complex protein 3 homolog	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding factor	IPR005612	-	-
Sma3	Nucleolar complex-associated	IPR011501	-	-
Sma3	Nucleolar complex-associated protein 3	IPR016903	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H628

Fln msg: Distance to subject end: 100 aas, your sequence is shorter than subject: 99 - 276

Fln protein: VLVTLKNLLQKYVKCRNLLENDGGGGSIGGTVARYQPEASDPELSGALSSILWELALLSKHYHPAVSELADNIASMSMSHNSAVLSTLSPPDAFRTYST

Protein Length: 100

Fln nts: TGTGCTGGTGACGCTCAAGAATCTACTGCAAAAGTATGTGAAATGTCGTAATTTATTGGAAAACGATGGTGGAGGTGGCTCAATTGGTGGTACTGTAGCGAGATATCAACCTGAGGCCTCAGACCCTGAGTTAAGTGGAGCTCTTTCTTCAATCTTATGGGAGTTGGCCTTGCTATCAAAGCATTATCATCCAGCTGTTTCTGAATTGGCTGACAATATTGCTAGCATGAGCATGTCTCATAATTCAGCTGTTCTTTCAACTCTTTCTCCACCAGATGCCTTCAGGACCTATTCAACAAA

Fln Alignment:

biogeco2_mira_c4120___LVTLKNLLQKYVKCRNLLENDGGGGSIGGTVARYQPEASDPELSGALSSILWELALLSKHYHPAVSELADNIASMSMSHNSAVLSTLSPPDAFRTYS
B9H628_________________LVTLKQLLQKNVKCRNLLENDAGGGSVSGSIAKYQPYATDPNLSGALASVLWELNLLCKHYQPAISTIASSISTMSTSHNQVYLASTSPQQAFRDLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain