SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8899

Length: 496 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8899
CAAGAACAGGGACAGGGTTCTGGAATGGACAGTGGATATCCTTTCCAGAATCCCTTCCCACACATGTATGGTCCAGCGCCCAGGAGGCGTCCGAGGCTTTATCACTGCGAATCCCTCTAATGTGGAGCATATTCTGAGAGCCAATTTTCAGAATTACCCCAAGGGAGAACACTTCAGTTTCTTTCTCCACGATTTCCTGGGCAAGGGGATCTTCAACACTGATGGGGAGCTGTGGAAAATGCAAAGGAAGGCTGCGAGCTACGAATTCAACACCAAGTCGCTCCGGAACTTCGTGGTGGAGGCTGTTCAGTGGGAAATCAAGAACCGGCTAATGGTGGTGCTCAAGAGCGCATGCGAAGGGGGAGAGATCATAGACTTGCAGGACGTTCTGATGAGGTTTGCATTCGACAATATCTGCAAGGTGGCGTTCGGTGTCGATCCCGGTTGCCTCCACCCTTCTCTGCCCAGGTCCCAATTTGCAGAGGCTTTTAACGAT

Ace file of the UniGene biog2_v2.0_unigene8899 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1827	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Putative cytochrome P450 [Oryza sativa Japonica Group] gb\|EAY89085.1\| hypothetical protein OsI_10573 [Oryza sativa Indica Group]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cytochrome p450	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	68%
Blast2go	heme binding	GO:0020037	Molecular Function	68%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	68%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LML7

Fln msg: Distance to subject end: 313 aas, your sequence is shorter than subject: 143 - 456

Fln protein: MVQRPGGVRGFITANPSNVEHILRANFQNYPKGEHFSFFLHDFLGKGIFNTDGELWKMQRKAASYEFNTKSLRNFVVEAVQWEIKNRLMVVLKSACEGGEIIDLQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFND

Protein Length: 144

Fln nts: CAAGAACAGGGACAGGGTTCTGGAATGGACAGTGGATATCCTTTCCAGAATCCCTTCCCACACATGT_-_ATGGTCCAGCGCCCAGGAGGCGTCCGAGGCTTTATCACTGCGAATCCCTCTAATGTGGAGCATATTCTGAGAGCCAATTTTCAGAATTACCCCAAGGGAGAACACTTCAGTTTCTTTCTCCACGATTTCCTGGGCAAGGGGATCTTCAACACTGATGGGGAGCTGTGGAAAATGCAAAGGAAGGCTGCGAGCTACGAATTCAACACCAAGTCGCTCCGGAACTTCGTGGTGGAGGCTGTTCAGTGGGAAATCAAGAACCGGCTAATGGTGGTGCTCAAGAGCGCATGCGAAGGGGGAGAGATCATAGACTTGCAGGACGTTCTGATGAGGTTTGCATTCGACAATATCTGCAAGGTGGCGTTCGGTGTCGATCCCGGTTGCCTCCACCCTTCTCTGCCCAGGTCCCAATTTGCAGAGGCTTTTAACGAT

Fln Alignment:

biogeco2_mira_c4115___MVQRPGGVRGFITANPSNVEHILRANFQNYPKGEHFSFFLHDFLGKGIFNTDGELWKMQRKAASYEFNTKSLRNFVVEAVQWEIKNRLMVVLKSACEGGEIIDLQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFND
B8LML7_________________MIQRPGGVRGIITANPSNVEHILRANFQNYPKGERFSFLLHDFLGRGILNTDGELWKMQRKAASYEFNTKSLRNFVVEAVQWEIKNRLMAVLKNACERGEVIELQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFND

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain