SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8887

Length: 289 nt

UniGene Fasta

>biog2_v2.0_unigene8887
GATAATCAAGATTCGTAATAGCTACAAACTCAAGGATATGGCAGAACTGAGAGCTGCAGTTTCAGGACCTCGGAATCCAACTGATGCGGCAATGCGATTATGCTACACTGCCATGGATGCTGCTTCAGTGGAGACCATAAATCAAGCTTCCATGGCTGCTGCCATGAAGATGGCTGAAGCAGAGGCCATGGCTGCCGCGGCAAAAGAGCAGCAAGAGAGGCAGAGTATGTTGCAAGNTTGGCAGAGGAAGCAGATATGTTTCTTGAAGCTGCATCTGCTGTGTTTGAAC

Ace file of the UniGene biog2_v2.0_unigene8887

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7572	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MYB transcription factor MYB107 [Glycine max]	-	-	2.0e-39	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	myb transcription factor myb107	-	-	0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	nucleosome assembly	GO:0006334	Biological Process	64%
Blast2go	DNA binding	GO:0003677	Molecular Function	64%
Blast2go	nucleosome	GO:0000786	Cellular Component	64%
Blast2go	nucleus	GO:0005634	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA99

Fln msg: Separated hits, possible frame ERROR between 151 and 202, STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 96 - 289

Fln protein: IIKIRNSYKLKDMAELRAAVSGPRNPTDAAMRLCYTAMDAASVETINQAxxxxxxxxxxxxxxxxxxKRAAREAEYVARLAEEADMFLEAASAVFE

Protein Length: 97

Fln nts: GATAATCAAGATTCGTAATAGCTACAAACTCAAGGATATGGCAGAACTGAGAGCTGCAGTTTCAGGACCTCGGAATCCAACTGATGCGGCAATGCGATTATGCTACACTGCCATGGATGCTGCTTCAGTGGAGACCATAAATCAAGCTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAAAAGAGCAGCAAGAGAGGCAGAGTATGTTGCAAGaTTGGCAGAGGAAGCAGATATGTTTCTTGAAGCTGCATCTGCTGTGTTTGA___AC

Fln Alignment:

biogeco2_mira_c4092___IIKIRNSYKLKDMAELRAAVSGPRNPTDAAMRLCYTAMDAASVETINQASxxxxxxxxxxxxxxxxxKRAAREAEYVARLAEEADMFLEAASAVF
D5AA99_________________IIRIRNSYKLKDMAEPRAAVLGPRNSADGLKQLWYNPMDAASLETINQASxxxxxxxxxxxxxxxxxEEAAREAEYDTRLAEEADIFLKAVSEVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain