SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8871

Length: 468 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8871
AGAGAAGCTTTGAGAAGTCGTTTGGCCAGTCCTCGGTGTTCATTGCATCGACTCTCATGGACAACGGTGGTGTTCCAGAGTCGACCAATCCAGCTTCACTCATCAAAGAAGCTATACATGTGATCAGCTGTGGCTACGAAGAGAAAACCGAATGGGGGAAAGAGGTCGGATGGATCTATGGTTCTGTGACAGAAGACATTCTAACAGGTTTCAAGATGCACTGCCGAGGGTGGCGCTCCATTTACTGCATGCCCAAGAGACCGGCATTCAAGGGGTCTGCTCCTATCAATCTATCAGATCGTCTGCACCAAGTTCTTCGTTGGGCATTGGGTTCTATTGAAATCTTATTCAGCAGGCACTGCCCATTGTGGTATGGATTTGGAGCAGGACGTCTCAAGTGGCTGGAAAGACTGGCCTACACGAACACCATCGTCTATCCCCTCACGTCTCTTCCTCTGATTGCCTACT

Ace file of the UniGene biog2_v2.0_unigene8871 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4065	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase catalytic subunit n=3 Tax=Pinaceae RepID=Q5DI95_PINTA	-	-	96%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine).	-	-	100%
Blast2go	cellulose synthase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	89%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	89%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cellulose synthase	IPR005150	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q5DI95

Fln msg: Distance to subject end: 211 aas, your sequence is shorter than subject: 155 - 984

Fln protein: RSFEKSFGQSSVFIASTLMDNGGVPESTNPASLIKEAIHVISCGYEEKTEWGKEVGWIYGSVTEDILTGFKMHCRGWRSIYCMPKRPAFKGSAPINLSDRLHQVLRWALGSIEILFSRHCPLWYGFGAGRLKWLERLAYTNTIVYPLTSLPLIAY

Protein Length: 156

Fln nts: AGAGAAGCTTTGAGAAGTCGTTTGGCCAGTCCTCGGTGTTCATTGCATCGACTCTCATGGACAACGGTGGTGTTCCAGAGTCGACCAATCCAGCTTCACTCATCAAAGAAGCTATACATGTGATCAGCTGTGGCTACGAAGAGAAAACCGAATGGGGGAAAGAGGTCGGATGGATCTATGGTTCTGTGACAGAAGACATTCTAACAGGTTTCAAGATGCACTGCCGAGGGTGGCGCTCCATTTACTGCATGCCCAAGAGACCGGCATTCAAGGGGTCTGCTCCTATCAATCTATCAGATCGTCTGCACCAAGTTCTTCGTTGGGCATTGGGTTCTATTGAAATCTTATTCAGCAGGCACTGCCCATTGTGGTATGGATTTGGAGCAGGACGTCTCAAGTGGCTGGAAAGACTGGCCTACACGAACACCATCGTCTATCCCCTCACGTCTCTTCCTCTGATTGCCTACT

Fln Alignment:

biogeco2_mira_c4059___RSFEKSFGQSSVFIASTLMDNGGVPESTNPASLIKEAIHVISCGYEEKTEWGKEVGWIYGSVTEDILTGFKMHCRGWRSIYCMPKRPAFKGSAPINLSDRLHQVLRWALGSIEILFSRHCPLWYGFGAGRLKWLERLAYTNTIVYPLTSLPLIAY
Q5DI95_________________RSFEKSFGQSSVFIASTLMDNGGVPESTNPASLIKEAIHVISCGYEEKTEWGKEVGWIYGSVTEDILTGFKMHCRGWRSIYCMPKRPAFKGSAPINLSDRLHQVLRWALGSIEILFSRHCPLWYGFGAGRLKWLERLAYTNTIVYPLTSLPLIAY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain