SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8846

Length: 672 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene8846 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7441	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Sphingosine-1-phosphate lyase [Arabidopsis thaliana] sp\|Q9C509.1\|SGPL_ARATH RecName: Full=Sphingosine-1-phosphate lyase; Short=S1PL; Short=SP-lyase; Short=SPL; AltName: Full=Sphingosine-1-phosphate aldolase gb\|AAG51494.1\|AC069471_25 sphingosine-1-phosphat	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	sphingosine-1-phosphate lyase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sphinganine-1-phosphate aldolase.	EC:4.1.2.27	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Sphingolipid metabolism	00600		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Lyases, Carbon-carbon lyases, Carboxy-lyases.	EC:4.1.1.-	-	82%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	82%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	82%
Blast2go	Purine metabolism	00230	82%
Blast2go	Arginine and proline metabolism	00330	82%
Blast2go	Tyrosine metabolism	00350	82%
Blast2go	Phenylalanine metabolism	00360	82%
Blast2go	Benzoate degradation	00362	82%
Blast2go	Tryptophan metabolism	00380	82%
Blast2go	Pyruvate metabolism	00620	82%
Blast2go	Dioxin degradation	00621	82%
Blast2go	Xylene degradation	00622	82%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	82%
Blast2go	Chloroalkane and chloroalkene degradation	00625	82%
Blast2go	Naphthalene degradation	00626	82%
Blast2go	Phenylpropanoid biosynthesis	00940	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	sphingolipid catabolic process	GO:0030149	Biological Process	82%
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	82%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	82%
Blast2go	sphinganine-1-phosphate aldolase activity	GO:0008117	Molecular Function	82%
Blast2go	carboxy-lyase activity	GO:0016831	Molecular Function	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain