SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8797

Length: 328 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8797
TCAAATGGTCTTTTGGACCCCTGGAGCGGGGGAGGTGTTCTTCAAAACATTTCGAGCAGCATTGTAGCACTCGTAACAGAGCTAGGTGCCCATCACTTGGATTTGCGTGCGGCAACGGAAAATGATCCAATTTGGCTAGTAGAGCAACGAAATGCGGAAATTCAAATTATAAATAATTGGATGAATGAATACTATCAAAACATAGGAATTTATACCTCTGAAATTTTGGGCAAGAATGAGTACTATCAAGACAAAGGAATTTATGCTTCTGAAATTTAGGGCAAATATTGCCCTTCTGGTGGGCATGATTAATACCAACCAGTTTCTG

Ace file of the UniGene biog2_v2.0_unigene8797 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10862	2/4
SustainPine v2.0	sp_v2.0_unigene29817	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	Serine carboxypeptidase S28 family protein [Arabidopsis thaliana] gb\|ABF57288.1\| At5g65760 [Arabidopsis thaliana] dbj\|BAF00060.1\| lysosomal Pro-X carboxypeptidase [Arabidopsis thaliana] gb\|AED98102.1\| Serine carboxypeptidase S28 family protein [Arabidopsi	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	serine carboxypeptidase s28 family protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	78%
Blast2go	carboxypeptidase activity	GO:0004180	Molecular Function	78%
Blast2go	vacuole	GO:0005773	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S28	IPR008758	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX2

Fln msg: your sequence is shorter than subject: 93 - 509

Fln protein: SNGLLDPWSGGGVLQNISSSIVALVTELGAHHLDLRAATENDPIWLVEQRNAEIQIINNWMNEYYQNIGIYTSEILGKNEYYQDKGIYASEI*

Protein Length: 94

Fln nts: TCAAATGGTCTTTTGGACCCCTGGAGCGGGGGAGGTGTTCTTCAAAACATTTCGAGCAGCATTGTAGCACTCGTAACAGAGCTAGGTGCCCATCACTTGGATTTGCGTGCGGCAACGGAAAATGATCCAATTTGGCTAGTAGAGCAACGAAATGCGGAAATTCAAATTATAAATAATTGGATGAATGAATACTATCAAAACATAGGAATTTATACCTCTGAAATTTTGGGCAAGAATGAGTACTATCAAGACAAAGGAATTTATGCTTCTGAAATTTAG___GGCAAATATTGCCCTTCTGGTGGGCATGATTAATACCAACCAGTTTCTG

Fln Alignment:

biogeco2_mira_c3937___SNGLLDPWSGGGVLQNISSSIVALVTELGAHHLDLRAATENDPIWLVEQRNAEIQIINNWMNEYYQNIGIYTSEI
B8LPX2_________________SNGLLDPWSGGGVLQNISNSIVALVTELGAHHLDLRAATENDPLWLVEQRNAEMKIINKWMNEYYQDKGIYTFEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain