SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8778

Length: 509 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8778
ATTGGGTCAGACGACAATCATCCACTCCATATCCATCTCGGACTGTTTCTCGTCCTCCAGCAAACAGAACTGCTGAAACTGGACGAATTTAAGCTTGCATGCAGAAACAGAACGATGCCCTCAGATGCAATATTGAGAAACATGCCAAGGGAAAAGTCATGGCAGCGCCTGCGCAGGAACGTGGATGGAAGAACGTGTTTAAGATGCAACCCGGATATATGACAACCATTCTTGTTCAGTTTTCGCTTTTGGATTCTGAACAACCTTATCCCTTCAATGCCACTGCTGAACCAGGCTATGTGTATCACTGTCATATTCTGGATCACGAAGACAATGAAATGATGAGGCCTCTCAAAGTTCGGACGTGAATCGACGTCAGCACGTACGAAAAATAGTGTTAGTAAGGGCTAAACAATTTGTCATAGGGTATTAAATGCCTAGGTATATGCATGTTATATAACATACAGTTTTACTTTTAATTTATGTAGCCACCAAAAACTAGTGTGTTA

Ace file of the UniGene biog2_v2.0_unigene8778 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1417	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	low-phosphate root 1 [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	multi-copper oxidase type i family protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on diphenols and related substances as donors, With oxygen as acceptor.	EC:1.10.3.-	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Betalain biosynthesis	00965	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	root development	GO:0048364	Biological Process	77%
Blast2go	auxin polar transport	GO:0009926	Biological Process	77%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	77%
Blast2go	meristem maintenance	GO:0010073	Biological Process	77%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	77%
Blast2go	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	77%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	77%
Blast2go	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	GO:0016682	Molecular Function	77%
Blast2go	copper ion binding	GO:0005507	Molecular Function	77%
Blast2go	cell wall	GO:0005618	Cellular Component	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	77%
Blast2go	response to karrikin	GO:0080167	Biological Process	77%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Cupredoxin	IPR008972	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY9

Fln msg: Overlapping hits, possible frame ERROR between 150 and 93, your sequence is shorter than subject: 123 - 583

Fln protein: IGSDDNHPLHIHLGLFLVLQQTELLKLDEFxxxxxxxxxxxxxxxxxxxxxKVMAAPAQERGWKNVFKMQPGYMTTILVQFSLLDSEQPYPFNATAEPGYVYHCHILDHEDNEMMRPLKVRT*

Protein Length: 124

Fln nts: ATTGGGTCAGACGACAATCATCCACTCCATATCCATCTCGGACTGTTTCTCGTCCTCCAGCAAACAGAACTGCTGAAACTGGACGAATTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAGTCATGGCAGCGCCTGCGCAGGAACGTGGATGGAAGAACGTGTTTAAGATGCAACCCGGATATATGACAACCATTCTTGTTCAGTTTTCGCTTTTGGATTCTGAACAACCTTATCCCTTCAATGCCACTGCTGAACCAGGCTATGTGTATCACTGTCATATTCTGGATCACGAAGACAATGAAATGATGAGGCCTCTCAAAGTTCGGACGTGAATCGACGTCAGCACGTACGAAAAATAGTGTTAGTAAGGGCTAAACAATTTGTCATAGGGTATTAAATGCCTAGGTATATGCATGTTATATAACATACAGTTTTACTTTTAATTTATGTAGCCACCAAAAACTAGTGTGTTA

Fln Alignment:

biogeco2_mira_c3896___SDDNHPLHIHLGLFLVLQQTELLKLDEFKLACxxxxxxxxxxxxxxxxHAKGKVMAAPAQERGWKNVFKMQPGYMTTILVQFSLLDSEQPYPFNATAEPGYVYHCHILDHEDNEMMRPLKVRT
B8LRY9_________________TDDNHPLHIHLGLFVVLQQTELLKLDEFK-ACxxxxxxxxxxxxxxxxHAKGKVMAAPVQERGWKNVFKIQPGYITTILVQFSFLDSHQPYPFNASTEPGYVYHCHILDHEDNEMMRPLKIRS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
73	33		66		0.997453
120		33		66	0.997476
136		66	33		0.997452
140	33		66		0.997452
377	66	33			0.997452
378	66	33			0.997452
379		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain