SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8775

Length: 570 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8775
ACTTTATTTCTACCATGTCTGATTTTCACACAACTGGGAAGAGCTGTGACTCTACAAAAGATGATTGAATGGTGGTTCATTCCTGTCAACGTTGTGCTTGCTGCCATATCGGGCTCAGTAATAGGTTTTATTGTTGCATCAATTGTTCGGCCACCTAAGAATTACTTCAAGTTTACCGTTGTACAAATTGGAATTGGAAATATTGGCAATGTACCGCTTGTTTTGATTAGTGCTTTGTGTCAAGACAGAACAAATCCTTTTGGTGATTCCAAAACTTGCAATCAAATGGGTAGTGCGTACATATCATTCGGCCAATGGGTTGGTGCAGTCATTCTTTACACTTATGTATTCTCTATGCTTTCTCCTCCTGAAGATTCAGCAAAGGGAGACCTTGAATCTGCATCCACAGGAGTGAAAAATAGGCTTGACAATCCAGGCAGTGCAAAGTTTCCATTGCTGGCATCAGAAGAGTTGCTTTCTGATTCTTCATCAACATCAGTGGATTGGCGTTCAAAGGCAAGGAAGATAGGTGACGGTATATCTTCCCTTGTTGATCGATTCAAGCTTAAG

Ace file of the UniGene biog2_v2.0_unigene8775 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4714	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin efflux carrier component, auxin transport protein n=2 Tax=Populus trichocarpa RepID=B9IGX9_POPTR	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	auxin efflux carrier auxin transport protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	0.0	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Auxin efflux carrier	IPR004776	-	0.0	-
Sma3	Ribose 5-phosphate isomerase, type A	IPR004788	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTN6

Fln msg: Distance to subject end: 204 aas, your sequence is shorter than subject: 190 - 452

Fln protein: TLFLPCLIFTQLGRAVTLQKMIEWWFIPVNVVLAAISGSVIGFIVASIVRPPKNYFKFTVVQIGIGNIGNVPLVLISALCQDRTNPFGDSKTCNQMGSAYISFGQWVGAVILYTYVFSMLSPPEDSAKGDLESASTGVKNRLDNPGSAKFPLLASEELLSDSSSTSVDWRSKARKIGDGISSLVDRFKLK

Protein Length: 191

Fln nts: ACTTTATTTCTACCATGTCTGATTTTCACACAACTGGGAAGAGCTGTGACTCTACAAAAGATGATTGAATGGTGGTTCATTCCTGTCAACGTTGTGCTTGCTGCCATATCGGGCTCAGTAATAGGTTTTATTGTTGCATCAATTGTTCGGCCACCTAAGAATTACTTCAAGTTTACCGTTGTACAAATTGGAATTGGAAATATTGGCAATGTACCGCTTGTTTTGATTAGTGCTTTGTGTCAAGACAGAACAAATCCTTTTGGTGATTCCAAAACTTGCAATCAAATGGGTAGTGCGTACATATCATTCGGCCAATGGGTTGGTGCAGTCATTCTTTACACTTATGTATTCTCTATGCTTTCTCCTCCTGAAGATTCAGCAAAGGGAGACCTTGAATCTGCATCCACAGGAGTGAAAAATAGGCTTGACAATCCAGGCAGTGCAAAGTTTCCATTGCTGGCATCAGAAGAGTTGCTTTCTGATTCTTCATCAACATCAGTGGATTGGCGTTCAAAGGCAAGGAAGATAGGTGACGGTATATCTTCCCTTGTTGATCGATTCAAGCTTAAG

Fln Alignment:

biogeco2_mira_c3892___LFLPCLIFTQLGRAVTLQKMIEWWFIPVNVVLAAISGSVIGFIVASIVRPPKNYFKFTVVQIGIGNIGNVPLVLISALCQDRTNPFGDSKTCNQMGSAYISFGQWVGAVILYTYVFSMLSPPED
C0PTN6_________________LFLPCLIFTELGKSVTLKNMREWWFIPANVILSTAIGCILGYLVALICRPPPQYFRFTVVMTGFGNTGNLPLAIVGSICHSSDQPFG--QHCNTTGVAYISFAQWVAVILVYTFVYHMLEPPEE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
351	66		33		0.997471

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain