SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8771

Length: 431 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8771
ACTTGGAGATAATATTCTTTGTGAAGTCCCGTCACGGAATACAACGTGTGTAATTTGCATGGGTCAGGGTTCAGTACACTGTTCTGATTGCAAAGGAACAGGGTTCCGGGCAAAGTGGCTAGGTCAAGGTCCTTTGAAGACGGCTGAAAATGAATCTGAGTGAAGTGTCTTTTGTAAATTTAAATGCATCCTAAAAGTTTTGTGGTTGGGAGCTGGGATATTCCTTATTAACTTAACCAGTGGAGTCGAAGCTTGCATTGAAACTAATAAGCATTTTCCATGAGTTCTGTAACCCGTGACACATCTAATGGAAGGGCTAGTGTCATATTTTGGAAAAGGTTGACTACTTTTATAAGTTTATAGTATATACTGGTTGAAAATGCCTGCTAAAAGTGATGGCATCATCTCTGAACATTGCACTGCAGAAACCT

Ace file of the UniGene biog2_v2.0_unigene8771 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18110	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	83%
Blast2go	tsi1-interacting protein tsip1	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9HB83

Fln msg: your sequence is shorter than subject: 54 - 139

Fln protein: LGDNILCEVPSRNTTCVICMGQGSVHCSDCKGTGFRAKWLGQGPLKTAENESE*

Protein Length: 55

Fln nts: ACTTGGAGATAATATTCTTTGTGAAGTCCCGTCACGGAATACAACGTGTGTAATTTGCATGGGTCAGGGTTCAGTACACTGTTCTGATTGCAAAGGAACAGGGTTCCGGGCAAAGTGGCTAGGTCAAGGTCCTTTGAAGACGGCTGAAAATGAATCTGAGTGA___AGTGTCTTTTGTAAATTTAAATGCATCCTAAAAGTTTTGTGGTTGGGAGCTGGGATATTCCTTATTAACTTAACCAGTGGAGTCGAAGCTTGCATTGAAACTAATAAGCATTTTCCATGAGTTCTGTAACCCGTGACACATCTAATGGAAGGGCTAGTGTCATATTTTGGAAAAGGTTGACTACTTTTATAAGTTTATAGTATATACTGGTTGAAAATGCCTGCTAAAAGTGATGGCATCATCTCTGAACATTGCACTGCAGAAACCT

Fln Alignment:

biogeco2_mira_c3885___LGDNILCEVPSRNTTCVICMGQGSVHCSDCKGTGFRAKWLGQ
B9HB83_________________LGDNMLCQVPSRNTTCVICAGKGSMRCSDCKGTGFRAKWLGE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
280		25		75	0.996473
320		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain