SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8743

Length: 339 nt

UniGene Fasta

>biog2_v2.0_unigene8743
ATGGGGGACGAGCTCGAGTTGCTAATCAATTTTTTATCCAGGTTTATTCTTGTACCAAAATATTCAAGATTTCTCATTTCCCTTACAGATAGGGTTCTGGATGCACGTGCAATAGATCTTGGAAAGTCAGAAAATATTAAAAAACAGATTACAGACCTGAAGGGAATAGTTGTTCAGGAGCTTCGAGTGCAGCAGTCCATGCAAGAATTGCAAGGGATTATTGAGCCACTAATTCGAGCTTCTGCTCGATAAATGATCTAAATGGAGAGTTTTATCCATTACATGAATGAGTATGTCACCTTTCGTGCTCCACCTATTGATTTTTATTTTGCAGCCTAG

Ace file of the UniGene biog2_v2.0_unigene8743

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8255	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] gb\|AAC63653.1\| unknown protein [Arabidopsis thaliana] gb\|AAM15129.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10921.1\| transducin family protein / WD-40 repeat family prote	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	u3 small nucleolar rna-associated protein	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	68%
Blast2go	megagametogenesis	GO:0009561	Biological Process	68%
Blast2go	binding	GO:0005488	Molecular Function	68%
Blast2go	nucleolus	GO:0005730	Cellular Component	68%
Blast2go	macromolecular complex	GO:0032991	Cellular Component	68%
Blast2go	plastid	GO:0009536	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A875

Fln msg: your sequence is shorter than subject: 84 - 354

Fln protein: MGDELELLINFLSRFILVPKYSRFLISLTDRVLDARAIDLGKSENIKKQITDLKGIVVQELRVQQSMQELQGIIEPLIRASAR*

Protein Length: 85

Fln nts: ATGGGGGACGAGCTCGAGTTGCTAATCAATTTTTTATCCAGGTTTATTCTTGTACCAAAATATTCAAGATTTCTCATTTCCCTTACAGATAGGGTTCTGGATGCACGTGCAATAGATCTTGGAAAGTCAGAAAATATTAAAAAACAGATTACAGACCTGAAGGGAATAGTTGTTCAGGAGCTTCGAGTGCAGCAGTCCATGCAAGAATTGCAAGGGATTATTGAGCCACTAATTCGAGCTTCTGCTCGATAA___ATGATCTAAATGGAGAGTTTTATCCATTACATGAATGAGTATGTCACCTTTCGTGCTCCACCTATTGATTTTTATTTTGCAGCCTAG

Fln Alignment:

biogeco2_mira_c3837___DELELLINFLSRFILVPKYSRFLISLTDRVLDARAIDLGKSENIKKQITDLKGIVVQELRVQQSMQELQGIIEPLIRASAR
D5A875_________________DELELLISFLSKFILVPKYSRFLIALTDRVLDARAVDLEKSENIKKQIADLKGVVIQELRVQQSMQELQGIIEPLIRASAR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
152			25	75	0.996473
153	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain