SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8741

Length: 548 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8741
TTATAATGCCTCCGTCAGCTATTGATCGTCTGGCATCTCTGCACATAGATTATCCAATGCTTTTTGAGCTTCATAATCCAGTAACACAGCGTACATCACACTGTGGAGTACTTGAGTTTATTGCTGAGGAGGGCATGATATATATGCCATATTGGATGATGGAAAATATGCTTTTAGCAGAGGGTGATACAGTAGAAGTGAAAAATGCCACCCTTCCGAAAGGGACATATGTCAAACTGCAGCCCCATACAAAGGATTTTCTCGACATATCTAATCCTAAAGCAGTGTTGGAGACTAGTTTGAGGAACTTCTCCTGCTTGACCACAGGTGATAGCATCATGGTAGCTTATAACAACAAGAAATACTATATAGACATAGTTGAGGCAAAACCAGCTTCTGCCATAACTATTATTGAGACAGATTGTGAGGTGGATTTTGCTCCTCCTCTTGATTACAAAGAACCAGAAAGAGTTCCAGCCAAACCTGCTCCTTCTGCAAGCACAACAGCATCTGAAGAGGAATCAAAAGATGTGGCAGAACCGAAATTT

Ace file of the UniGene biog2_v2.0_unigene8741 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19388	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin fusion degradation protein n=1 Tax=Elaeis guineensis RepID=B3TLZ5_ELAGV	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	ubiquitin fusion degradation protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin fusion degradation protein UFD1	IPR004854	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACG2

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 182 - 314

Fln protein: IMPPSAIDRLASLHIDYPMLFELHNPVTQRTSHCGVLEFIAEEGMIYMPYWMMENMLLAEGDTVEVKNATLPKGTYVKLQPHTKDFLDISNPKAVLETSLRNFSCLTTGDSIMVAYNNKKYYIDIVEAKPASAITIIETDCEVDFAPPLDYKEPERVPAKPAPSASTTASEEESKDVAEPKF

Protein Length: 183

Fln nts: TTATAATGCCTCCGTCAGCTATTGATCGTCTGGCATCTCTGCACATAGATTATCCAATGCTTTTTGAGCTTCATAATCCAGTAACACAGCGTACATCACACTGTGGAGTACTTGAGTTTATTGCTGAGGAGGGCATGATATATATGCCATATTGGATGATGGAAAATATGCTTTTAGCAGAGGGTGATACAGTAGAAGTGAAAAATGCCACCCTTCCGAAAGGGACATATGTCAAACTGCAGCCCCATACAAAGGATTTTCTCGACATATCTAATCCTAAAGCAGTGTTGGAGACTAGTTTGAGGAACTTCTCCTGCTTGACCACAGGTGATAGCATCATGGTAGCTTATAACAACAAGAAATACTATATAGACATAGTTGAGGCAAAACCAGCTTCTGCCATAACTATTATTGAGACAGATTGTGAGGTGGATTTTGCTCCTCCTCTTGATTACAAAGAACCAGAAAGAGTTCCAGCCAAACCTGCTCCTTCTGCAAGCACAACAGCATCTGAAGAGGAATCAAAAGATGTGGCAGAACCGAAATTT

Fln Alignment:

biogeco2_mira_c3835___IMPPSAIDRLASLHIDYPMLFELHNPVTQRTSHCGVLEFIAEEGMIYMPYWMMENMLLAEGDTVEVKNATLPKGTYVKLQPHTKDFLDISNPKAVLETSLRNFSCLTTGDSIMVAYNNKKYYIDIVEAKPASAITIIETDCEVDFAPPLDYKEPERVXXXXXXXXXXXXXXXXXKDVAEPKF
D5ACG2_________________IMPPSALDRLASLHIDYPMLFELHNPATQRRSHCGVLEFIAEEGMIYMPYWMMQNMLLEEGDTVKVKNATLPKGTYVKLQPHTKDFLDISNPKAVLETTLRNFSCLTTGDSIMVAYNNKKYYIDIIESKPASAITIIETDCEVDFAPPLDYKEPERVPAVPAPAAKTTATQEESKDVEEPKF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
344	66			33	0.997456
345	33			66	0.997476
500	33		66		0.997452
532	66	33			0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain