SustainPineDB

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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8700

Length: 337 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8700
GAGTATGTTATCGAAACTTTCATCCAGGAGGGCAAGTCTGGGAGTGTGCCTGTGTATCTTAATGTCTATGACCTCAGCCCATGAATGGATACATATACTGGTTTGGCCTTGGAATATACCATTCAGGAGTAGAAGTTCATGGAGTTGAGTATGCATTTGGAGCACATGAGTTTCCTAGCAGTGGTGTTTTTGAGGTAGAGCCTCGACAGTGCCCGGGATTTACATTTCGTAAGTCCATATATATTGGAACAACAGATCTTGGTCCGAGAGAACTTAGAGACTTCATAGAGGACCTTGCTGGAAATTACAATGGAAATACATACCACTTAATTATGAA

Ace file of the UniGene biog2_v2.0_unigene8700 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3969	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	PPPDE putative thiol peptidase family protein [Arabidopsis thaliana] ref\|NP_973987.1\| PPPDE putative thiol peptidase family protein [Arabidopsis thaliana] gb\|AAL87252.1\| unknown protein [Arabidopsis thaliana] gb\|AAM45073.1\| unknown protein [Arabidopsis th	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF862, eukaryotic	IPR008580	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL65

Fln msg: Distance to subject end: 109 aas, atg_distance in limit (1-15): atg_distance = 1, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 85 - 221

Fln protein: MNGYIYWFGLGIYHSGVEVHGVEYAFGAHEFPSSGVFEVEPRQCPGFTFRKSIYIGTTDLGPRELRDFIEDLAGNYNGNTYHLIM

Protein Length: 86

Fln nts: GAGTATGTTATCGAAACTTTCATCCAGGAGGGCAAGTCTGGGAGTGTGCCTGTGTATCTTAATGTCTATGACCTCAGCCC_-_ATGAATGGATACATATACTGGTTTGGCCTTGGAATATACCATTCAGGAGTAGAAGTTCATGGAGTTGAGTATGCATTTGGAGCACATGAGTTTCCTAGCAGTGGTGTTTTTGAGGTAGAGCCTCGACAGTGCCCGGGATTTACATTTCGTAAGTCCATATATATTGGAACAACAGATCTTGGTCCGAGAGAACTTAGAGACTTCATAGAGGACCTTGCTGGAAATTACAATGGAAATACATACCACTTAATTATGAA

Fln Alignment:

biogeco2_mira_c3755___MNGYIYWFGLGIYHSGVEVHGVEYAFGAHEFPSSGVFEVEPRQCPGFTFRKSIYIGTTDLGPRELRDFIEDLAGNYNGNTYHLIM
B8LL65_________________MNGYIYWFGLGIYHSGVEVHGVEYAFGAHEFPSSGVFEVEPRQCPGFTFRKSIYIGTTDLGPRRLRDFIEELAGNYNGNTYHLIM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain