SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8675

Length: 465 nt

UniGene Fasta

>biog2_v2.0_unigene8675
ATGGGTCAGTGGCCTTGATGAAGAATGGGAAGAAGGTAGTATGTGGTTCACAGGAAGGAGTTCTGTTGCTTTATTCATGGGGTTATTTTAAGGACTGCAGTGACCGCTTTGTTGGACATCCACACTCAGTTGATGCTTTGGTAAAGTTAGACGAAGACACAGTGTTAACTGGATCAAGTGATGGAATCATCAGGGTTGTCTCCATTCTTCCCAACAAAATGATTGGTGTTATAGGAGAGCACAGCAGTTATCCTATTGAGCGCCTTGCATTTTCACATGATCGGAATGTTCTTGGCAGTGCTTCACATGATCAGATCCTAAAGCTCTGGGACATACATTATCTTCATGAAGATGATGAGCCTGAAACTAACAAGCAAGAAGATGTGAATGACGAAAATGTAGACATGGATTTGGATGTTGATACTGTAAAAAGACCAAGAGTTGCAAACGAAAGAAGAGAGCAGA

Ace file of the UniGene biog2_v2.0_unigene8675

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9297	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb\|AAC27402.2\| expressed protein [Arabidopsis thaliana] gb\|AAM65204.1\| unknown [Arabidopsis thaliana] dbj\|BAC42145.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63858.1\| putative G-protei	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	wd repeat-containing protein 55-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	75%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NS60

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 154 - 355

Fln protein: GSVALMKNGKKVVCGSQEGVLLLYSWGYFKDCSDRFVGHPHSVDALVKLDEDTVLTGSSDGIIRVVSILPNKMIGVIGEHSSYPIERLAFSHDRNVLGSASHDQILKLWDIHYLHEDDEPETNKQEDVNDENVDMDLDVDTVKRPRVANERREQ

Protein Length: 155

Fln nts: ATGGGTCAGTGGCCTTGATGAAGAATGGGAAGAAGGTAGTATGTGGTTCACAGGAAGGAGTTCTGTTGCTTTATTCATGGGGTTATTTTAAGGACTGCAGTGACCGCTTTGTTGGACATCCACACTCAGTTGATGCTTTGGTAAAGTTAGACGAAGACACAGTGTTAACTGGATCAAGTGATGGAATCATCAGGGTTGTCTCCATTCTTCCCAACAAAATGATTGGTGTTATAGGAGAGCACAGCAGTTATCCTATTGAGCGCCTTGCATTTTCACATGATCGGAATGTTCTTGGCAGTGCTTCACATGATCAGATCCTAAAGCTCTGGGACATACATTATCTTCATGAAGATGATGAGCCTGAAACTAACAAGCAAGAAGATGTGAATGACGAAAATGTAGACATGGATTTGGATGTTGATACTGTAAAAAGACCAAGAGTTGCAAACGAAAGAAGAGAGCAGA

Fln Alignment:

biogeco2_mira_c3715___SVALMKNGKKVVCGSQEGVLLLYSWGYFKDCSDRFVGHPHSVDALVKLDEDTVLTGSSDGIIRVVSILPNKMIGVIGEHSSYPIERLAFSHDRNVLGSASHDQILKLWDIHYLHEDDEPETNKQEDVNDENVDMDLDVDTVKRPRVANERREQ
A9NS60_________________SVTLMKHGKKVVCGSQEGVLLLYSWGYFKDCIDRFVGHPHSVDALLKLDEDTVLTGSSDGIIRVVSILPNKMIGVIGEHSSYPIERLAFSHDRNVLGSASHDQILKLWDVHYLHEDDEPETNKQEAVNEENVDMDLDVDIEKRPRVAGSKRKK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
117	66		33		0.997452
142		33	66		0.997452
153		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain