SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8672

Length: 488 nt

UniGene Fasta

>biog2_v2.0_unigene8672
CATGTCTATGTCAAACAAACCTAGTCTTTTGCCAGGCATGAATGTTTCAGCTGGCTTTAAGAGAAGGTCTTCTGCTCCTGTTATTGATGCTACAGAAATGGAATCTGTTAATTGCATCTCTCAAAGGCTTGCAAAAATGCCAAGTCCTTTGTTTCCAAAACGTCTACGTTCAGTTTATTGCTCAGCTGACAACATACACACAACAAGAGTGTCAATGGAGACTGACAATAGGAGCTGTGAACCTCAACAACTGCCAGCTCAATCAAGTGTAGTTTCACTGCCAATGCTATGTGATTGTGCACAAGGTGTATTTGGCAGTTCCTTTTCTAAGAATACCGATGAGATGCAATATACTCCATGCTTTTCAGCACCCTTTTTGCCAAGATCGGAACACTTACAACCACACACATCTAGAATCAGGGCTGCAACTTGCAGCATACACCCTTTTGCATCTAAATCTTGATTCCTCCGTTGCTAGTACTGTTATT

Ace file of the UniGene biog2_v2.0_unigene8672

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3826	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF298 domain containing protein	-	-	2.0e-37	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	protein	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	0.0	62%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Defective-in-cullin neddylation protein	IPR014764	-	0.0	-
Sma3	Potentiating neddylation domain	IPR005176	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZS3

Fln msg: your sequence is shorter than subject: 154 - 375

Fln protein: MSMSNKPSLLPGMNVSAGFKRRSSAPVIDATEMESVNCISQRLAKMPSPLFPKRLRSVYCSADNIHTTRVSMETDNRSCEPQQLPAQSSVVSLPMLCDCAQGVFGSSFSKNTDEMQYTPCFSAPFLPRSEHLQPHTSRIRAATCSIHPFASKS*

Protein Length: 155

Fln nts: CATGTCTATGTCAAACAAACCTAGTCTTTTGCCAGGCATGAATGTTTCAGCTGGCTTTAAGAGAAGGTCTTCTGCTCCTGTTATTGATGCTACAGAAATGGAATCTGTTAATTGCATCTCTCAAAGGCTTGCAAAAATGCCAAGTCCTTTGTTTCCAAAACGTCTACGTTCAGTTTATTGCTCAGCTGACAACATACACACAACAAGAGTGTCAATGGAGACTGACAATAGGAGCTGTGAACCTCAACAACTGCCAGCTCAATCAAGTGTAGTTTCACTGCCAATGCTATGTGATTGTGCACAAGGTGTATTTGGCAGTTCCTTTTCTAAGAATACCGATGAGATGCAATATACTCCATGCTTTTCAGCACCCTTTTTGCCAAGATCGGAACACTTACAACCACACACATCTAGAATCAGGGCTGCAACTTGCAGCATACACCCTTTTGCATCTAAATCTTGA___TTCCTCCGTTGCTAGTACTGTTATT

Fln Alignment:

biogeco2_mira_c3710___MSMSNKPSLLPGMNVSAGFKRRSSAPVIDATEMESVNCISQRLAKMPSPLFPKRLRSVYCSADNIHTTR-VSMETDNRSCEPQQLPAQSSVVSLPMLCDCAQGVFGSSFSKNTDEMQYTPCFSAPFLPRSEHLQPHTSRIRAATCSIHPFASKS
A9NZS3_________________MSMSNKSSLLPGMNVSAGFKRRSSAPAINDTEMESVNCISQRLAKMPSPLFPKRVRSVYCSADSLHTTRGVSMETDHRSCEPQQLSSQSSIVSLPMLCNCAQGVFGSSFSKNTDDMQYTPCFSTPFLPRAEHFQPYTSRVRAATCSMHPFAYKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain