SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8632

Length: 346 nt

UniGene Fasta

>biog2_v2.0_unigene8632
GAACTGTCACCTCATGCCAATGTTGTAAATTTCAGTGACGTCCTTATATATAGATTGGTGGCCCTCAAGCACCTCGTTCCGCTCTGCCGATAGGTGCAGAGCCTTCAGCAGATCCCACCCGTGTAGCTCTTGTCGCAGTTACTAGTGATCTAGTGCATGCTGTTCTTGCTGTTTCTTATGCCAAGGAGCCTGATCTGCTACTCTCCAGTAATGTAGCTGGATTTATCTATATCACCGACATTGACATAGAAAGGAAGAAGATTTCATATATAGCTCCATGCCCAGGGGAGCTTCCTAGTAGGTTACTTTTGACAGGGTCTTAACATGGGTGGACTAGTAGGTTACT

Ace file of the UniGene biog2_v2.0_unigene8632

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15000	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	CLP-like protein 3 [Arabidopsis thaliana] ref\|NP_974220.1\| CLP-like protein 3 [Arabidopsis thaliana] gb\|AAF04897.1\|AC011437_12 unknown protein [Arabidopsis thaliana] gb\|AAL32944.1\| Unknown protein [Arabidopsis thaliana] gb\|AAM91151.1\| unknown protein [Ara	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein clp1 homolog	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	phyllome development	GO:0048827	Biological Process	83%
Blast2go	mRNA processing	GO:0006397	Biological Process	83%
Blast2go	flower development	GO:0009908	Biological Process	83%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	mRNA cleavage factor complex	GO:0005849	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Clathrin adaptor, gamma-adaptin, appendage	IPR008153	-	-
Sma3	Pre-mRNA cleavage complex II Clp1	IPR010655	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9E3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 107 - 425

Fln protein: TVTSCQCCKFQ*RPYI*IGGPQAPRSALPIGAEPSADPTRVALVAVTSDLVHAVLAVSYAKEPDLLLSSNVAGFIYITDIDIERKKISYIAPCPGELPSRLLLTGS*

Protein Length: 108

Fln nts: GAACTGTCACCTCATGCCAATGTTGTAAATTTCAGTGACGTCCTTATATATAGATTGGTGGCCCTCAAGCACCTCGTTCCGCTCTGCCGATAGGTGCAGAGCCTTCAGCAGATCCCACCCGTGTAGCTCTTGTCGCAGTTACTAGTGATCTAGTGCATGCTGTTCTTGCTGTTTCTTATGCCAAGGAGCCTGATCTGCTACTCTCCAGTAATGTAGCTGGATTTATCTATATCACCGACATTGACATAGAAAGGAAGAAGATTTCATATATAGCTCCATGCCCAGGGGAGCTTCCTAGTAGGTTACTTTTGACAGGGTCTTAA___CATGGGTGGACTAGTAGGTTACT

Fln Alignment:

biogeco2_mira_c3639___GGPQAPRSALPIGAEPSADPTRVALVAVTSDLVHAVLAVSYAKEPDLLLSSNVAGFIYITDIDIERKKISYIAPCPGELPSRLLLTGS
D5A9E3_________________GGPQAPRSALPIGAEPSADPTRVAPVTITSDLVHAVLAVSYAKEPELLLSSNVAGFIYITDIDIERKKISYIAPCPGELPSRLLLAGS

SNPs (tot: 3)

Position	A %	G %	T %	Probability
56	33		66	0.997467
60		33	66	0.997453
212	66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain