SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8617

Length: 445 nt

UniGene Fasta

>biog2_v2.0_unigene8617
ATGGGGGCAGATGGTTCTACGACTAGTTGAAGCTGTCGATGTCTATCTTGCAGGCACTGTCATGTTGATATTTGGAATGGGCTTATATGGGCTATTCATTAGCGATTTGCCTGCGAATATGACTGCAGATAAAGATCGTGCTCTTGCTAATTCTTCTTTGTTTGGGATGTTTGTTCTCAAGGAGAGACCACGGTGGATGCGAATCAGTTCATTAGATGAACTGAAAACAAAGTTGGGGCATGTTATTGTGATGATTCTTCTTGTAAAGATGTTTGAGAGGAGCAAAACCGTTATGATTACAAGTGGTATGGATTTGCTCAGCTACGCCATGTGTATTTTTCTGTCCTCAGCTTCATTATTTGTGCTTCACAACCTTCATAAGTAGGATTCTTGCACAACCATTGTAAATTATATGTATGAGTATAGTCATCCAAGAAGTCAAGTA

Ace file of the UniGene biog2_v2.0_unigene8617

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2780	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] dbj\|BAB08699.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN12932.1\| unknown protein [Arabidopsis thaliana] gb\|AED91932.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	structural constituent of ribosome	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	87%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Uncharacterised protein family UPF0114	IPR005134	-	-
Sma3	Protein of unknown function DUF1218	IPR009606	-	-
Sma3		IPR010847	-	-
Sma3	Uncharacterised protein family UPF0114, plant	IPR016804	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWL7

Fln msg: your sequence is shorter than subject: 128 - 314

Fln protein: WGQMVLRLVEAVDVYLAGTVMLIFGMGLYGLFISDLPANMTADKDRALANSSLFGMFVLKERPRWMRISSLDELKTKLGHVIVMILLVKMFERSKTVMITSGMDLLSYAMCIFLSSASLFVLHNLHK*

Protein Length: 129

Fln nts: ATGGGGGCAGATGGTTCTACGACTAGTTGAAGCTGTCGATGTCTATCTTGCAGGCACTGTCATGTTGATATTTGGAATGGGCTTATATGGGCTATTCATTAGCGATTTGCCTGCGAATATGACTGCAGATAAAGATCGTGCTCTTGCTAATTCTTCTTTGTTTGGGATGTTTGTTCTCAAGGAGAGACCACGGTGGATGCGAATCAGTTCATTAGATGAACTGAAAACAAAGTTGGGGCATGTTATTGTGATGATTCTTCTTGTAAAGATGTTTGAGAGGAGCAAAACCGTTATGATTACAAGTGGTATGGATTTGCTCAGCTACGCCATGTGTATTTTTCTGTCCTCAGCTTCATTATTTGTGCTTCACAACCTTCATAAGTAG___GATTCTTGCACAACCATTGTAAATTATATGTATGAGTATAGTCATCCAAGAAGTCAAGTA

Fln Alignment:

biogeco2_mira_c3604___GQMVLRLVEAVDVYLAGTVMLIFGMGLYGLFISDLPA---NMTADKDRA-LANSSLFGMFVLKERPRWMRISSLDELKTKLGHVIVMILLVKMFERSKTVMITSGMDLLSYAMCIFLSSASLFVLHNLH
A9NWL7_________________GKVILLLVEAVDVYLMGTVMLIFGMGLYELFVNSLEIPDRNSTQQTSRATVCGSNLFGLFRLQERPKWLEIQSLDELKTKLGHVIVMVLLVGMFEKSKKVPIHSGVDLLCFSGSVLLSSGSLFLLSKLN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
330		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain