SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8584

Length: 545 nt

UniGene Fasta

>biog2_v2.0_unigene8584
ATATTCATGGCTTATCAAATACTGTATATCCACAGCCATGTAGCCTACTCGAGGAAAAACCAGCAGAAGGGGATGCATTCTGTCCCAGTCCTCATGAACTTCACACCAGAGAAGAAAATAGCTTACAGCATTGCTCTTATAGTAGCAGCCATTAATCGGTTCTATAACTTTAAACTTTCCCAGTTTAAGCAAGATCAAAAAGCTTAGGCATGCTTTTGTCTTCCCCACAGTATCTGGAACAGGGATACGATGTTCAATATAGTCTATAGTAGATGAAGTGTATCAGTCTATATTAATCTCTTTCTGCAGCTTTCTTACCTTCTTTACGTGTATAATTTCAATTGCACGTTTTCTTTACCCAAATAAAGGGGATTCAAGAGCTTATTGTTGTCTATGATCTTCAGATCATGGGACAACGATCTTCAAATCATTTCTCATGAGATGAGAAGTATTTGAGTCTTTTCTAAACTTCTTTATCATATTTTTACTGTTTAAATTTTCTTCTTTAGAGCCAAAGGATGGCTGCTGTCCATTACTTTAAAGGT

Ace file of the UniGene biog2_v2.0_unigene8584

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8823	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RCG6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	probable polygalacturonase-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	80%
Blast2go	Starch and sucrose metabolism	00500	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	80%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	80%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: your sequence is shorter than subject: 51 - 472

Fln protein: IHGLSNTVYPQPCSLLEEKPAEGDAFCPSPHELHTREENSLQHCSYSSSH*

Protein Length: 52

Fln nts: ATATTCATGGCTTATCAAATACTGTATATCCACAGCCATGTAGCCTACTCGAGGAAAAACCAGCAGAAGGGGATGCATTCTGTCCCAGTCCTCATGAACTTCACACCAGAGAAGAAAATAGCTTACAGCATTGCTCTTATAGTAGCAGCCATTAA___TCGGTTCTATAACTTTAAACTTTCCCAGTTTAAGCAAGATCAAAAAGCTTAGGCATGCTTTTGTCTTCCCCACAGTATCTGGAACAGGGATACGATGTTCAATATAGTCTATAGTAGATGAAGTGTATCAGTCTATATTAATCTCTTTCTGCAGCTTTCTTACCTTCTTTACGTGTATAATTTCAATTGCACGTTTTCTTTACCCAAATAAAGGGGATTCAAGAGCTTATTGTTGTCTATGATCTTCAGATCATGGGACAACGATCTTCAAATCATTTCTCATGAGATGAGAAGTATTTGAGTCTTTTCTAAACTTCTTTATCATATTTTTACTGTTTAAATTTTCTTCTTTAGAGCCAAAGGATGGCTGCTGTCCATTACTTTAAAGGT

Fln Alignment:

biogeco2_mira_c3550___IHGLSNTVYPQPCSLLEEKPAEGDAFCPSPHELHTREENSLQHC
B8LQW0_________________IHGLSNAVYPQPCSLLEERPAEGDAFCPSPQELDTTEENSLQHC

SNPs (tot: 3)

Position	A %	C %	G %	Probability
105		75	25	0.996473
106	75		25	0.996473
107		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain