SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8570

Length: 418 nt

UniGene Fasta

>biog2_v2.0_unigene8570
ATGGGGACCCCATACCACAGGCAATGATTGGGGAAAGGGCTGCGGCTAAGTGCTTTGATATTGCTGTCGAGTTCCCAGCGGTACGTTGGAGGAGCTCGGCATTAAGGCTTCGAATGGCGGTCACATGGTGTTCAGTGCTGAGGGTAGTCATTCTGCTCCTTCTATCAGGCGTCATAGCCATTGCCTTCTTTACTCTTCCTTTCGAGAAGATATTAAAGGCTTTCCTCCTTTGGATTGACACAAATTTAGGTCGTTGGGGACCTCTTGTCCTGGCTCTGGCTTATATCCCTTTGACAGTTCTGGCAGTCCCAGCTTCTATACTAACAATAGGAGGTGGTTACCTGTTTGGGCTCCCTATTGGATTTGTTGCAGACTCTATGGGATCTACTGCTGGTGCAACAGCTGCATTTCTTCTTGG

Ace file of the UniGene biog2_v2.0_unigene8570

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6851	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	SNARE associated Golgi protein family [Arabidopsis thaliana] gb\|AAR92258.1\| At1g03260 [Arabidopsis thaliana] gb\|AAS47670.1\| At1g03260 [Arabidopsis thaliana] gb\|AEE27551.1\| SNARE associated Golgi protein family [Arabidopsis thaliana]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	tvp38 tmem64 family membrane protein slr0305-like	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	81%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosomal protein S8	IPR000630	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	SNARE associated Golgi protein	IPR015414	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8I9

Fln msg: Distance to subject end: 173 aas, your sequence is shorter than subject: 131 - 275

Fln protein: MIGERAAAKCFDIAVEFPAVRWRSSALRLRMAVTWCSVLRVVILLLLSGVIAIAFFTLPFEKILKAFLLWIDTNLGRWGPLVLALAYIPLTVLAVPASILTIGGGYLFGLPIGFVADSMGSTAGATAAFLL

Protein Length: 132

Fln nts: ATGGGGACCCCATACCACAGGCA_-_ATGATTGGGGAAAGGGCTGCGGCTAAGTGCTTTGATATTGCTGTCGAGTTCCCAGCGGTACGTTGGAGGAGCTCGGCATTAAGGCTTCGAATGGCGGTCACATGGTGTTCAGTGCTGAGGGTAGTCATTCTGCTCCTTCTATCAGGCGTCATAGCCATTGCCTTCTTTACTCTTCCTTTCGAGAAGATATTAAAGGCTTTCCTCCTTTGGATTGACACAAATTTAGGTCGTTGGGGACCTCTTGTCCTGGCTCTGGCTTATATCCCTTTGACAGTTCTGGCAGTCCCAGCTTCTATACTAACAATAGGAGGTGGTTACCTGTTTGGGCTCCCTATTGGATTTGTTGCAGACTCTATGGGATCTACTGCTGGTGCAACAGCTGCATTTCTTCTTGG

Fln Alignment:

biogeco2_mira_c3520___MAVTWCXXXXXXXXXXXXXXXAIAFFTLPFEKILKAFLLWIDTNLGRWGPLVLALAYIPLTVLAVPASILTIGGGYLFGLPIGFVADSMGSTAGATAAFLL
D5A8I9_________________MAVTWCSVLRVVILLLLSGVIAIAFFTLPFEKILKTFLVWIDTNLGHWGPLVLALAYIPLTVLAVPASILTLGGGYLFGLPVGFVADSVGSTAGATAAFLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain