SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8551

Length: 500 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8551
CAATACAGGCCATGCTCGCGGGGCTTCCAGGTTATTCCGCTTGTCCGCTCTTCTTGAACCATCCACAGAAGGCAGCAGAATCTTTGTAACCCTCTATAAATAGTGTGCAAGCGTGGCTCGTTTCTGTTTTGATTTGGCTTTCCAGGAGAACGATCTCTCTGCACAGTGACATAGGTTAACAATGGCGAAAACCCTTAATGGACCATATGCCGACCTGGAGATGGGGAGCTCGTCTCTCTACCCGAGTCAACCCTCCGAAGAAATTCAGCTCCGGTGGGCTTTCATAAGGAAAATATACTCGATTCTCACTATCCAACTGCTACTCACCATTGCTGTTGCTAGCGTTGTGGTCTTCGTACGACCGGTCGCGCATTTCTTCGTCTCTACTCCGGCCGGGCTCGCTCTGTACATTTTAGCTATCTTTATTCCCCTAATCTTGATATGGCCTTTGTATTACTACTCTCAAAAGCATCCTGTAAAATTACATCCTTCTCGCAGCA

Ace file of the UniGene biog2_v2.0_unigene8551 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5368	3/4
SustainPine v2.0	sp_v2.0_unigene80859	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	Transmembrane BAX inhibitor motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SFF7_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	bax inhibitor-1 motif-containing protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	83%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	83%
Blast2go	receptor activity	GO:0004872	Molecular Function	83%
Blast2go	glutamate binding	GO:0016595	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inhibitor of apoptosis-promoting Bax1-related	IPR006214	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMB0

Fln msg: Distance to subject end: 138 aas, your sequence is shorter than subject: 106 - 244

Fln protein: MAKTLNGPYADLEMGSSSLYPSQPSEEIQLRWAFIRKIYSILTIQLLLTIAVASVVVFVRPVAHFFVSTPAGLALYILAIFIPLILIWPLYYYSQKHPVKLHPSRS

Protein Length: 107

Fln nts: CAATACAGGCCATGCTCGCGGGGCTTCCAGGTTATTCCGCTTGTCCGCTCTTCTTGAACCATCCACAGAAGGCAGCAGAATCTTTGTAACCCTCTATAAATAGTGTGCAAGCGTGGCTCGTTTCTGTTTTGATTTGGCTTTCCAGGAGAACGATCTCTCTGCACAGTGACATAGGTTAACA_-_ATGGCGAAAACCCTTAATGGACCATATGCCGACCTGGAGATGGGGAGCTCGTCTCTCTACCCGAGTCAACCCTCCGAAGAAATTCAGCTCCGGTGGGCTTTCATAAGGAAAATATACTCGATTCTCACTATCCAACTGCTACTCACCATTGCTGTTGCTAGCGTTGTGGTCTTCGTACGACCGGTCGCGCATTTCTTCGTCTCTACTCCGGCCGGGCTCGCTCTGTACATTTTAGCTATCTTTATTCCCCTAATCTTGATATGGCCTTTGTATTACTACTCTCAAAAGCATCCTGTAAAATTACATCCTTCTCGCAGCA

Fln Alignment:

biogeco2_mira_c3491___MAKTLNGPYADLEMGSSSLYPSQPSEEIQLRWAFIRKIYSILTIQLLLTIXXXXXXXXXXXXXXXXVSTPAGLALYILAIFIPLILIWPLYYYSQKHPV
B8LMB0_________________MAKTLPGPYADLETGNSALYPAQASDEIPLRWAFIRKIYSILTIQLLLTIAVASVVVFVRPVAHFFVSTPAGLALYIFAIIFPLILIWPLYYYSQKHPV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
150	75		25		0.996474
251		33		66	0.997452
266	75	25			0.996473
271	75			25	0.996473
336		33		66	0.997452
351		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain