SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8516

Length: 441 nt

UniGene Fasta

>biog2_v2.0_unigene8516
AGGCTCCTCCTTCCGAGGTGATTATCAGAAGAGCTTGCCTCTTTGTTCTAATTGGTGTATGGAGTGTAATGAATTCAGCTGAAGGAGGGCCCGCATTCCAGGTTGCAGTTTCCCTGGTGGCATGCATATATTTTCTGAATGAGAAAGTGAAGAGTATCGGAAGAGCTTGTGTCCTTGGGTTTGGAGCACTTGCTGTTGGGTGGCTGTTTGGTTCTTTGGTGATACCGGCAATCCCTTTGTCTCTGCTTCCTGTGACCTGGACTGTTGAACTTGTTACATCTCTTATAACTTACGTCTTTCTTTTATGGCCTGTACATTTTTGAAGTGAAGACCATGCCATGGAATTGATCTACTCCTTCGATTACTGTCACCTCCAAATGGGCAGGTTTACGGGGAGGTTATACCAGTTTTAATTTTGCATGGAAACGGTTTGGCATACTG

Ace file of the UniGene biog2_v2.0_unigene8516

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18298	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] dbj\|BAB09821.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM78111.1\| AT5g23040/MYJ24_3 [Arabidopsis thaliana] gb\|AAN28774.1\| At5g23040/MYJ24_3 [Arabidopsis thaliana] dbj\|BAD95465.1\| cell growth defec	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	79%
Blast2go	cell death	GO:0008219	Biological Process	79%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	79%
Blast2go	DNA binding	GO:0003677	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	0.0	-
Sma3		IPR015609	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX64

Fln msg: your sequence is shorter than subject: 107 - 279

Fln protein: APPSEVIIRRACLFVLIGVWSVMNSAEGGPAFQVAVSLVACIYFLNEKVKSIGRACVLGFGALAVGWLFGSLVIPAIPLSLLPVTWTVELVTSLITYVFLLWPVHF*

Protein Length: 108

Fln nts: AGGCTCCTCCTTCCGAGGTGATTATCAGAAGAGCTTGCCTCTTTGTTCTAATTGGTGTATGGAGTGTAATGAATTCAGCTGAAGGAGGGCCCGCATTCCAGGTTGCAGTTTCCCTGGTGGCATGCATATATTTTCTGAATGAGAAAGTGAAGAGTATCGGAAGAGCTTGTGTCCTTGGGTTTGGAGCACTTGCTGTTGGGTGGCTGTTTGGTTCTTTGGTGATACCGGCAATCCCTTTGTCTCTGCTTCCTGTGACCTGGACTGTTGAACTTGTTACATCTCTTATAACTTACGTCTTTCTTTTATGGCCTGTACATTTTTGA___AGTGAAGACCATGCCATGGAATTGATCTACTCCTTCGATTACTGTCACCTCCAAATGGGCAGGTTTACGGGGAGGTTATACCAGTTTTAATTTTGCATGGAAACGGTTTGGCATACTG

Fln Alignment:

biogeco2_mira_c3435___PPSEVIIRRACLFVLIGVWSVMNSAEGGPAFQVAVSLVACIYFLNEKVKSIGRACVLGFGALAVGWLFGSLVIPAIPLSLLPVTWTVELVTSLITYVFL
A9NX64_________________PPSEVIIRRACLFAVIGVWSVMNSSEGGPAFQVAVSLVTCIYFLNEKVKSIGRACVLGFGALAVGWLFGSLVIPVIPLSLLPVTWTLELVTALISYIFL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
135	33	66			0.997459
139	66		33		0.997453
252		33		66	0.997464
266	25			75	0.996479
270	75		25		0.996478
271		75	25		0.996478

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain