SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8501

Length: 373 nt

UniGene Fasta

>biog2_v2.0_unigene8501
ATGGGCGGATACCTGTTCCTCATTGGTCGGATTAAGGAGCTCATTAACCGAGGAGGAGAGAAGATATCACCAATGGAAGTAGACGCAGTGTTACTGTCACACCCTGCGGTGGCAGAGGCGGTTGCCTTTGGAGTTCCGGATGAAAATATGGAGAGGAGATCAACGCGGCGGTGATTCCAAAGGAGGGGGATATTGTCACTGAAAGCCAAATCCAGGATTTATGCAAGAAAAATTTGGCGAGTTTCAAGGTACCGAAAAGGGTATTCATCACCGATTCTCTCCCGAAAACTGCCACCGGGAAAATCCAGAGGCGATTGGTTGCGGAACATTTCATAGCAACTGTATCGGCTGCCAAGGTTCCTAAATTTGGAGC

Ace file of the UniGene biog2_v2.0_unigene8501

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16508	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative acyl-CoA synthetase [Capsicum annuum]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	amp dependent	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%
Blast2go	apoplast	GO:0048046	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL52

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 144 and 144, STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 124 - 536

Fln protein: MGGYLFLIGRIKELINRGGEKISPMEVDAVLLSHPAVAEAVAFGVPDxxYGEEINAAVIPKEGDIVTESQIQDLCKKNLASFKVPKRVFITDSLPKTATGKIQRRLVAEHFIATVSAAKVPKFG

Protein Length: 125

Fln nts: ATGGGCGGATACCTGTTCCTCATTGGTCGGATTAAGGAGCTCATTAACCGAGGAGGAGAGAAGATATCACCAATGGAAGTAGACGCAGTGTTACTGTCACACCCTGCGGTGGCAGAGGCGGTTGCCTTTGGAGTTCCGGATxxxxxxTATGGAGAGGAGATCAACGCGGCGGTGATTCCAAAGGAGGGGGATATTGTCACTGAAAGCCAAATCCAGGATTTATGCAAGAAAAATTTGGCGAGTTTCAAGGTACCGAAAAGGGTATTCATCACCGATTCTCTCCCGAAAACTGCCACCGGGAAAATCCAGAGGCGATTGGTTGCGGAACATTTCATAGCAACTGTATCGGCTGCCAAGGTTCCTAAATTTGGAGC

Fln Alignment:

biogeco2_mira_c3410___GYLFLIGRIKELINRGGEKISPMEVDAVLLSHPAVAEAVAFGVPDEKYGEEINAAVIPKEGDIVTESQIQDLCKKNLASFKVPKRVFITDSLPKTATGKIQRRLVAEHFIATVSAAKVPKFG
B8LL52_________________GYLFLIGRIKELINRGGEKISPMEVDAVLLLHPAVAEAVAFAVPDEKYGEEINAAVVTKEGATVTESEIRGFCKKNLASFKIPKRVFITESIPKTATGKVQRRLVAEHFIATVSAAKVPKFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain