SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8473

Length: 346 nt

UniGene Fasta

>biog2_v2.0_unigene8473
ATGGGGGAAGCAGTCAGAGGAGAGTGGTGGCGTTTACGTGATTGCAAAGGAAAACCCTCTGGAGTGCTTGGCTGGTGGCCATCAAGGGCTGTAACTTTTGTTGAAAACCATGACACTGGGTCAACACAGGCTCACTGGGTTTTTCCAAGTGATCATATTATGGAGGGCTATGCTTACATCTTGACACACCCTGGAATACCAACAGTCTTCTATGACCATTTTTTTTATTGGGGAAGCTCAATACAAGACCAGATTATAAAGCTGATGAACATTCGAAGAACACAAGATTTGCACAGCCGTTCTGCAATCAGGATTTTAGAGGCCAATTCCAGTGTTTATGCTGCAA

Ace file of the UniGene biog2_v2.0_unigene8473

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2420	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-amylase n=2 Tax=Hordeum vulgare subsp. vulgare RepID=C3W8N1_HORVD	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	alpha-amylase-like 2	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.2.1.6-	-	0.0	84%
Blast2go	Alpha-amylase.	EC:3.2.1.1	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	84%
Blast2go	glucan 1,4-alpha-maltotetraohydrolase activity	GO:0033910	Molecular Function	84%
Blast2go	alpha-amylase activity	GO:0004556	Molecular Function	84%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	84%
Blast2go	extracellular region	GO:0005576	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr histidine phosphorylation site	IPR001020	-	-
Sma3	Phosphoribosylglycinamide formyltransferase, active site	IPR001555	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	-
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Alpha-amylase, plant	IPR013775	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUX3

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 115 - 448

Fln protein: MGEAVRGEWWRLRDCKGKPSGVLGWWPSRAVTFVENHDTGSTQAHWVFPSDHIMEGYAYILTHPGIPTVFYDHFFYWGSSIQDQIIKLMNIRRTQDLHSRSAIRILEANSSVYAA

Protein Length: 116

Fln nts: ATGGGGGAAGCAGTCAGAGGAGAGTGGTGGCGTTTACGTGATTGCAAAGGAAAACCCTCTGGAGTGCTTGGCTGGTGGCCATCAAGGGCTGTAACTTTTGTTGAAAACCATGACACTGGGTCAACACAGGCTCACTGGGTTTTTCCAAGTGATCATATTATGGAGGGCTATGCTTACATCTTGACACACCCTGGAATACCAACAGTCTTCTATGACCATTTTTTTTATTGGGGAAGCTCAATACAAGACCAGATTATAAAGCTGATGAACATTCGAAGAACACAAGATTTGCACAGCCGTTCTGCAATCAGGATTTTAGAGGCCAATTCCAGTGTTTATGCTGCAA

Fln Alignment:

biogeco2_mira_c3359___EAVRG-EWWRLRDCKGKPSGVLGWWPSRAVTFVENHDTGSTQAHWVFPSDHIMEGYAYILTHPGIPTVFYDHFFYWGSSIQDQIIKLMNIRRTQDLHSRSAIRILEANSSVYAA
A9NUX3_________________EAVKSNELWRLKDSNGKPAGMIGVLPQKAVTFIDNHDTGSTQNIWPFPSDKLLQGYAYILTHPGIPTIFYDHFV--DGNLKKEIQNLSAIRKRNNINANSNCRIITAESDLYMA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain