SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8445

Length: 517 nt

UniGene Fasta

>biog2_v2.0_unigene8445
CCATTGTTACAAAGGCATGGCCTACAAATCCACAGCTTGCAGCAGTTGGGTCTTGCTGTTTAGTAGGGTTGGTTTGTGGTGGGGTGCTTTATGTTGCCAATCTGGGAGATTCCCGTGCTGTTTTGGGAAAATTGGTCAAGTCTACAGGAGAAATTGCTGCCATGCAGTTGTCAATGGAGCATAATGCAGGTATTGAGGCTGTGAGGCAAGAGCTACAATCTTTGCATCCAGATGACCCACATATTGTAGTTCTAAAGCATGGGGTTTGGCGTGTGAAGGGTATCATTCAGGTTTCGAGATCTATTGGAGATGCATACTTGAAAAAGCCTGAGTTCAACCGAGAACCTTTATATCAAAAGTTCCGTCTTTCTGAACCTCTCCGTGGGCCTATCTTGACTGCTGAACCCTCAATTAATGTCTATACCCTTCAGCCTCATGATCACTTTATCATATTTGCATCAGATGGTCTTTGGGAACTACTTGAGCAACCAGGAAGCAGTTGATATCGTTCATAGTC

Ace file of the UniGene biog2_v2.0_unigene8445

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7056	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2C (PP2C) [Fagus sylvatica]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein phosphatase	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	84%
Blast2go	metal ion binding	GO:0046872	Molecular Function	84%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	84%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA04

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 73 aas, your sequence is shorter than subject: 167 - 370

Fln protein: IVTKAWPTNPQLAAVGSCCLVGLVCGGVLYVANLGDSRAVLGKLVKSTGEIAAMQLSMEHNAGIEAVRQELQSLHPDDPHIVVLKHGVWRVKGIIQVSRSIGDAYLKKPEFNREPLYQKFRLSEPLRGPILTAEPSINVYTLQPHDHFIIFASDGLWELLEQPGSS*

Protein Length: 168

Fln nts: CCATTGTTACAAAGGCATGGCCTACAAATCCACAGCTTGCAGCAGTTGGGTCTTGCTGTTTAGTAGGGTTGGTTTGTGGTGGGGTGCTTTATGTTGCCAATCTGGGAGATTCCCGTGCTGTTTTGGGAAAATTGGTCAAGTCTACAGGAGAAATTGCTGCCATGCAGTTGTCAATGGAGCATAATGCAGGTATTGAGGCTGTGAGGCAAGAGCTACAATCTTTGCATCCAGATGACCCACATATTGTAGTTCTAAAGCATGGGGTTTGGCGTGTGAAGGGTATCATTCAGGTTTCGAGATCTATTGGAGATGCATACTTGAAAAAGCCTGAGTTCAACCGAGAACCTTTATATCAAAAGTTCCGTCTTTCTGAACCTCTCCGTGGGCCTATCTTGACTGCTGAACCCTCAATTAATGTCTATACCCTTCAGCCTCATGATCACTTTATCATATTTGCATCAGATGGTCTTTGGGAACTACTTGAGCAACCAGGAAGCAGTTGATATCGTTCATAGTC

Fln Alignment:

biogeco2_mira_c3309___IVTKAWPTNPQLAAVGSXXXXXXXXXXXXYVANLGDSRAVLGKLVKSTGEIAAMQLSMEHNAGIEAVRQELQSLHPDDPHIVVLKHGVWRVKGIIQVSRSIGDAYLKKPEFNREPLYQKFRLSEPLRGPILTAEPSINVYTLQPHDHFIIFASDGLWELL
D5AA04_________________LVTNAWPTKPQLAAVGSCCLVGLVYEKTLYVANLGDSRVVMGRLIRATGEIAAVQLSAEHNASMEAVRQELRSSHPDDPQIVVLKHDVWRVKGIIQVSRSIGDAYLKRPEFNREPLNPKFRLPEPLRRPVLTAEPSITTYTLQPHDRFLIFASDGLWEHL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
187		75	25		0.996473
188	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain