SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8436

Length: 557 nt

UniGene Fasta

>biog2_v2.0_unigene8436
AACTTGGGAGCTATTGATGAGAAAACTTGATTGTGGCTTGAAATATTCGGAGTTGTTGGTGTTAGAAGTGGCATGGAGGTGGAAAGAATTATATTGTTCGAATCCGCTAGAGACAAAGCAGCCGAGCAGTATCTGCGTTCGCCTCTCGACGCCGATAATTTAATACGATGGGGTGGAGTACTGCTTGAACTTGCCCACTTTTATAAAGGACAAGCATCGGTTAACATGCTTCAAGATGCTGTGTCCAAGTTTGAGGAAGCTCTGAAAATTAATCCAAAAGAGCATTATGCTTTATGGTGTTTGGGAAATGCTTTTACAGCTCAAAACTTCCTTTTATTTGACACGGGGAAGGTGAATGTGAACTTCAGGAAAGCTGTAGAGTGTTATCAAAAGGCTCTAGATGAGGACCCTCACAACGAGCATTATTTGAAGGCTTTGGAGATGGCAAAGAAGGCACCTTCTCTTCACAAGGAGATATTGAAACAACTGACTTCTGAAGAGGTTGTAGTGAATGAAGAATGAATATTGAAGGAAGTTCCTCACAGGCTATAAGGAAA

Ace file of the UniGene biog2_v2.0_unigene8436

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13813	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Mitochondrial import receptor subunit TOM20; AltName: Full=Translocase of outer membrane 20 kDa subunit emb\|CAA63223.1\| TOM20 [Solanum tuberosum]	-	-	4.06377e-44	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	mitochondrial import receptor subunit tom20	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	protein import into mitochondrial outer membrane	GO:0045040	Biological Process	69%
Blast2go	binding	GO:0005488	Molecular Function	69%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	69%
Blast2go	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	69%
Blast2go	mitochondrial outer membrane translocase complex	GO:0005742	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Plant specific mitochondrial import receptor subunit TOM20	IPR010547	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSZ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 41 aas, your sequence is shorter than subject: 150 - 203

Fln protein: MEVERIILFESARDKAAEQYLRSPLDADNLIRWGGVLLELAHFYKGQASVNMLQDAVSKFEEALKINPKEHYALWCLGNAFTAQNFLLFDTGKVNVNFRKAVECYQKALDEDPHNEHYLKALEMAKKAPSLHKEILKQLTSEEVVVNEE*

Protein Length: 151

Fln nts: AACTTGGGAGCTATTGATGAGAAAACTTGATTGTGGCTTGAAATATTCGGAGTTGTTGGTGTTAGAAGTGGC_-_ATGGAGGTGGAAAGAATTATATTGTTCGAATCCGCTAGAGACAAAGCAGCCGAGCAGTATCTGCGTTCGCCTCTCGACGCCGATAATTTAATACGATGGGGTGGAGTACTGCTTGAACTTGCCCACTTTTATAAAGGACAAGCATCGGTTAACATGCTTCAAGATGCTGTGTCCAAGTTTGAGGAAGCTCTGAAAATTAATCCAAAAGAGCATTATGCTTTATGGTGTTTGGGAAATGCTTTTACAGCTCAAAACTTCCTTTTATTTGACACGGGGAAGGTGAATGTGAACTTCAGGAAAGCTGTAGAGTGTTATCAAAAGGCTCTAGATGAGGACCCTCACAACGAGCATTATTTGAAGGCTTTGGAGATGGCAAAGAAGGCACCTTCTCTTCACAAGGAGATATTGAAACAACTGACTTCTGAAGAGGTTGTAGTGAATGAAGAATGAATATTGAAGGAAGTTCCTCACAGGCTATAAGGAAA

Fln Alignment:

biogeco2_mira_c3295___MEVERIILFESARDKAAEQYLRSPLDADNLIRWGGVLLELAHFYKGQASVNMLQDAVSKFEEALKINPKEHYALWCLGNAFTAQNFLLFDTGKVNVNFRKAVECYQKALDEDPHNEHYLKALEMAKKAPSLHKEILKQLTSEEVVVNE
A9NSZ0_________________MEVERIVLFESARDKAAKEYLRSPHDADNLIRWGGVLLELAHFYQGQASINMLQDAVSKFEEALKINPKGHYALWCLGNALTSQNFLFPDMGKVNENFRKAEECYQKALDEDPHNEHYLKGLEMAKKAPSLHKEILKQLTSEQVVVNE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
290	33	66			0.997458
292			33	66	0.997453
293			33	66	0.997452
294	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain