SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8394

Length: 432 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8394
CAGGATTTGGAGATCAGAAATGACCGGGGCCATGCTTGCAATGTAGTCACTATCTTCCATCGCCTCTCCCAGAAGGCACATCACTTCCTTGTGTTATATACTGCCATGGAAACAGTGGTTGTCGAGCAGATGCCAATGAGGCAGCAGTCATACTCCTTCCTTCAAACATAACTGTTTTTACTCTTGATTTCTCGGGTTCAGGCCTCTCTGATGGTGATTATGTGAGCCTTGGTTGGCATGAGAAAGATGACCTCAAAGCTGCTGTTTCTTACCTTCGAAATAAAAAAATGTTTCTTGCATTGGACTTTGGGGACGATCAATGGGAGCTGTGACAAGCCTTCTTTATGGAGCAGAGGATCCATCAATTGCTGGGATGGTGTTGGATAGTCCTTTCTCTAATTTGTTCGATCTCATGATGGAGCTGGTTGACGT

Ace file of the UniGene biog2_v2.0_unigene8394 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4426	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SGX0_RICCO	-	-	66%
FL-Next	tr=Catalytic, putative; Ricinus communis (Castor bean).	-	-	87%
Blast2go	esterase lipase domain-containing protein	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SGX0

Fln msg: Overlapping hits, possible frame ERROR between 287 and 284, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 311 aas, your sequence is shorter than subject: 143 - 493

Fln protein: GFGDQK*PGPCLQCSHYLPSPLPEGTSLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFSGSGLSDGDYVSLGWHEKDDLKAAVSYLRNxxxVSCIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSPFSNLFDLMMELVD

Protein Length: 144

Fln nts: CAGGATTTGGAGATCAGAAATGACCGGGGCCATGCTTGCAATGTAGTCACTATCTTCCATCGCCTCTCCCAGAAGGCACATCACTTCCTTGTGTTATATACTGCCATGGAAACAGTGGTTGTCGAGCAGATGCCAATGAGGCAGCAGTCATACTCCTTCCTTCAAACATAACTGTTTTTACTCTTGATTTCTCGGGTTCAGGCCTCTCTGATGGTGATTATGTGAGCCTTGGTTGGCATGAGAAAGATGACCTCAAAGCTGCTGTTTCTTACCTTCGAAATxxxxxxxxxGTTTCTTGCATTGGACTTTGGGGACGATCAATGGGAGCTGTGACAAGCCTTCTTTATGGAGCAGAGGATCCATCAATTGCTGGGATGGTGTTGGATAGTCCTTTCTCTAATTTGTTCGATCTCATGATGGAGCTGGTTGACGT

Fln Alignment:

biogeco2_mira_c3225___GPCLQCSHYLPSPLPEGTSLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFSGSGLSDGDYVSLGWHEKDDLKAAVSYLRNKxNVSCIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSPFSNLFDLMMELVD
B9SGX0_________________GHTLQCSHYVPSPFPEDTPLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFSGSGLSDGDYVSLGWHERDDLKVVVSYLRSSxQISRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLFDLMMELVD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
150	33			66	0.997453
152			25	75	0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain