SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8384

Length: 463 nt

UniGene Fasta

>biog2_v2.0_unigene8384
ATCAACTGATGGGGCCTCTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAACTTCTTCATGGTAGTCACACACGAGTAGTTTCCATATCAACTCCTTCGAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGCAAAGAAGATCAGACACTTTGTTCACATTGCAAAGGAAGAGAAGCAGAATTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGGTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGCACAAGTCGTGACTGCCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAGTTTTGAGGATGCTGCCCGTGTAGCTTGTAATTTTTTGTATTATC

Ace file of the UniGene biog2_v2.0_unigene8384

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene416	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase delta catalytic subunit n=6 Tax=Poaceae RepID=DPOD1_ORYSJ	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	dna polymerase delta subunit 1	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	89%
Blast2go	Pyrimidine metabolism	00240	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	89%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	89%
Blast2go	exonuclease activity	GO:0004527	Molecular Function	89%
Blast2go	metal ion binding	GO:0046872	Molecular Function	89%
Blast2go	DNA binding	GO:0003677	Molecular Function	89%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3		IPR017966	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, pol2	IPR004578	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEH5

Fln msg: your sequence is shorter than subject: 141 - 228

Fln protein: QLMGPLLRIFEPILKNASKELLHGSHTRVVSISTPSNSGIMKFAKKQLSCIGCKTPISKEDQTLCSHCKGREAELYQKTVANVRELEMLFGKLWTQCQRCQGSLHQDVLCTSRDCPIFYRRKKAQKDLTEAEVQLERWQF*

Protein Length: 142

Fln nts: ATCAACTGATGGGGCCTCTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAACTTCTTCATGGTAGTCACACACGAGTAGTTTCCATATCAACTCCTTCGAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGCAAAGAAGATCAGACACTTTGTTCACATTGCAAAGGAAGAGAAGCAGAATTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGGTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGCACAAGTCGTGACTGCCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAGTTTTGA___GGATGCTGCCCGTGTAGCTTGTAATTTTTTGTATTATC

Fln Alignment:

biogeco2_mira_c3208___QLMGPLLRIFEPILKNASKELLHGSHTRVVSISTPSNSGIMKFAKKQLSCIGCKTPISKEDQTLCSHCKGREAELYQKTVANVRELEMLFGKLWTQCQRCQGSLHQDVLCTSRDCPIFYRRKKAQKDLTEAEVQLERWQF
D5AEH5_________________QLSKPLLRIFEPILKNASKELLHGSHTRAVSISTPSNSGIMKFAKKQLSCIGCKTPISKEDQTLCSHCKGREAELYQKTVANVRELEMLFGKLWTQCQRCQASLHQDVLCTSRDCPIFYRRKKAQKDLTEAEVQLERWQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain