SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8352

Length: 456 nt

UniGene Fasta

>biog2_v2.0_unigene8352
GTTGGTGCAGTCTTTTGAAGGTGGTCATAGAGGTGTTGTGAGATCTGTTTGGTCACCATTCAACATGAGAGGTGATCCTGTTCTTGAACAAAATATATTTGTCTGGACTGGTGGGGAGGATGGTCGTTTATGTTGTTGGTCAGAGGGTGATATTTCTGCAAAGAATCAAGCATGGATATCAGCTGGATTGATTATGAAGACAATGAAAAATTCAAAGCAGCACAGACATCGACCTTATTGAAATAAAACAGCTATACAGCTAACTGTTTCAAAAAGAGCATGACCCACAGGAGATTCCAATGGTTCCATGTGAATCATGATTCGGATTCCCCACATTTGAATTATTTTACAAGAGATTGATTGTGTTGTCGATATATTTCTCTGGAGACAACTGTTTAGACAAGAGATGATTATCAAGTTGAGCTATATATATTACGGTACAGATATATAATTATT

Ace file of the UniGene biog2_v2.0_unigene8352

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1384	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SAP3_RICCO	-	-	54%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	53%
Blast2go	protein	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9GS95

Fln msg: your sequence is shorter than subject: 80 - 378

Fln protein: LVQSFEGGHRGVVRSVWSPFNMRGDPVLEQNIFVWTGGEDGRLCCWSEGDISAKNQAWISAGLIMKTMKNSKQHRHRPY*

Protein Length: 81

Fln nts: GTTGGTGCAGTCTTTTGAAGGTGGTCATAGAGGTGTTGTGAGATCTGTTTGGTCACCATTCAACATGAGAGGTGATCCTGTTCTTGAACAAAATATATTTGTCTGGACTGGTGGGGAGGATGGTCGTTTATGTTGTTGGTCAGAGGGTGATATTTCTGCAAAGAATCAAGCATGGATATCAGCTGGATTGATTATGAAGACAATGAAAAATTCAAAGCAGCACAGACATCGACCTTATTGA___AATAAAACAGCTATACAGCTAACTGTTTCAAAAAGAGCATGACCCACAGGAGATTCCAATGGTTCCATGTGAATCATGATTCGGATTCCCCACATTTGAATTATTTTACAAGAGATTGATTGTGTTGTCGATATATTTCTCTGGAGACAACTGTTTAGACAAGAGATGATTATCAAGTTGAGCTATATATATTACGGTACAGATATATAATTATT

Fln Alignment:

biogeco2_mira_c3151___GGHRGVVRSVWSPFNMRGDPVLEQNIFVWTGGEDGRLCCWSEGDISAKNQAWISAGLIMKTMKNSKQHRHRPY
B9GS95_________________GGHTGVVRSVLPVSSKKGGLAQSQSIFGWTGGEDGRLCCWLSDDSTEINRSWISSALVMKPSKARKKKRHNPY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
89	25	75			0.996473
90	25	25			0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain