SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8343

Length: 515 nt

UniGene Fasta

>biog2_v2.0_unigene8343
CTGGAGCTGGCTGGAGCATCTATTGCCAATGTGGGAATCCAAGGATTAGCCTATGGAATTATGCTGGGAATGGCTAGTGCAGTGCAGACTGTGTGTGGACAAGCTTATGGTGCTAAACAGTACAGTATGCTTGGAGTCATTTGCCAGAGGTCTATGTTGATAATGGGTGTGACTGCTCTGCTCCTGGCTTTTCTCTACTGGTTTGCAGATCCTGTATTGCGTGCGATGGGGCAGAGTGATTCCATTTCTGCCCAGGGGGCGATTTATGCCAAAGGGCTCATTCCTCAGCTCTTTGCTTTCGCCATTAACTGCCCAATGCAGAGATTTTTGCAGGCTCAGAACATAGTTGCCCCTCTTGCATGTTTGTCTGTAGGGACATTTCTGCTCCACATTCTCTTGACATGGCTGGCAGTAGACAAGCTGGGATTTGGCCTTATGGGGGCAGCTCTGACACTGAGCTTTTCTTGGTGGATTCTCGTCATTGCCACTGCGTTGTATATTTTCACAGCCCTTCC

Ace file of the UniGene biog2_v2.0_unigene8343

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14793	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] sp\|Q9LYT3.1\|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 emb\|CAB86931.1\| putative protein [Arabidopsis thaliana] emb\|C	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	transparent testa 12	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of seed dormancy	GO:0010231	Biological Process	78%
Blast2go	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	78%
Blast2go	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	78%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADQ8

Fln msg: Distance to subject end: 260 aas, your sequence is shorter than subject: 171 - 517

Fln protein: LELAGASIANVGIQGLAYGIMLGMASAVQTVCGQAYGAKQYSMLGVICQRSMLIMGVTALLLAFLYWFADPVLRAMGQSDSISAQGAIYAKGLIPQLFAFAINCPMQRFLQAQNIVAPLACLSVGTFLLHILLTWLAVDKLGFGLMGAALTLSFSWWILVIATALYIFTAL

Protein Length: 172

Fln nts: CTGGAGCTGGCTGGAGCATCTATTGCCAATGTGGGAATCCAAGGATTAGCCTATGGAATTATGCTGGGAATGGCTAGTGCAGTGCAGACTGTGTGTGGACAAGCTTATGGTGCTAAACAGTACAGTATGCTTGGAGTCATTTGCCAGAGGTCTATGTTGATAATGGGTGTGACTGCTCTGCTCCTGGCTTTTCTCTACTGGTTTGCAGATCCTGTATTGCGTGCGATGGGGCAGAGTGATTCCATTTCTGCCCAGGGGGCGATTTATGCCAAAGGGCTCATTCCTCAGCTCTTTGCTTTCGCCATTAACTGCCCAATGCAGAGATTTTTGCAGGCTCAGAACATAGTTGCCCCTCTTGCATGTTTGTCTGTAGGGACATTTCTGCTCCACATTCTCTTGACATGGCTGGCAGTAGACAAGCTGGGATTTGGCCTTATGGGGGCAGCTCTGACACTGAGCTTTTCTTGGTGGATTCTCGTCATTGCCACTGCGTTGTATATTTTCACAGCCCTTCC

Fln Alignment:

biogeco2_mira_c3136___LELAGASIANVGIQGLAYGIMLGMASAVQTVCGQAYGAKQYSMLGVICQRSMLIMGVTALLLAFLYWFADPVLRAMGQSDSISAQGAIYAKGLIPQLFAFAINCPMQRFLQAQNIVAPLACLSVGTFLLHILLTWLAVDKLGFGLMGAALTLSFSWWILVIATALYI
D5ADQ8_________________LELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKTYGMLGIYLQRSTILLMVTGIPLTIIYAFSKPLLVLLGESETIAAAAAIFVYGLIPQIFAYAANFPIQKFLQAQSIVAPSAYISFCTIFVHVFLTWLAVYKLGFGIFGAALVLSLSWWIVVIAQFIYI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
343	66		33		0.997452
362	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain