SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8333

Length: 419 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8333
GAAACTTGATGCAGTTGCTGCTGTGAAGCGCTACAACAATGTGCAGCTTGATGGTAAACCGATGAAGATAGAACTTGTTGGGACAGGTTTAAGCTTGCCCTTGTCTGCTCGTGTTAATGTTACTGGAACATCTGCTGGAAGAGGAAGGAGGACAGTTGTAATGACGCCAGGATTTACACGAGCAGCAGCAGATGCTTCAATGGAGCAGCGGGGTGGCAATGGTAACTGGAATCGTCGACGCGGTAGGCGTTTCAATGACCGGGGAAGAGGAGGACGTCGTGGCCGTGGAAGAAACCAGGTCCCAGATAAGTCTGCGGCAGAACTTGACAAGGAGCTGGAAAACTATCATACTGAAGCCATGCAGACATCTTAACTTATCTTCTGATCTTAAACTTATCTTCTGCTGATAGAAAGATTTT

Ace file of the UniGene biog2_v2.0_unigene8333 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26860	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	1.0e-06	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	tho complex subunit	-	-	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG8

Fln msg: your sequence is shorter than subject: 124 - 274

Fln protein: KLDAVAAVKRYNNVQLDGKPMKIELVGTGLSLPLSARVNVTGTSAGRGRRTVVMTPGFTRAAADASMEQRGGNGNWNRRRGRRFNDRGRGGRRGRGRNQVPDKSAAELDKELENYHTEAMQTS*

Protein Length: 125

Fln nts: GAAACTTGATGCAGTTGCTGCTGTGAAGCGCTACAACAATGTGCAGCTTGATGGTAAACCGATGAAGATAGAACTTGTTGGGACAGGTTTAAGCTTGCCCTTGTCTGCTCGTGTTAATGTTACTGGAACATCTGCTGGAAGAGGAAGGAGGACAGTTGTAATGACGCCAGGATTTACACGAGCAGCAGCAGATGCTTCAATGGAGCAGCGGGGTGGCAATGGTAACTGGAATCGTCGACGCGGTAGGCGTTTCAATGACCGGGGAAGAGGAGGACGTCGTGGCCGTGGAAGAAACCAGGTCCCAGATAAGTCTGCGGCAGAACTTGACAAGGAGCTGGAAAACTATCATACTGAAGCCATGCAGACATCTTAA___CTTATCTTCTGATCTTAAACTTATCTTCTGCTGATAGAAAGATTTT

Fln Alignment:

biogeco2_mira_c3121___KLDAVAAVKRYNNVQLDGKPMKIELVGTGLSLPLSARVNVTGTSAGRGRRTVVMTPGFTRAAADASMEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQVPDKSAAELDKELENYHTEAMQTS
D5AEG8_________________KVDAVAAVKRYNNVQLDGKPMKIELVGTGLSLPLSARVNVTGTSAGRGRRTVVMTPGFTRAAADASMEQRGGNGNWNRRRGRRSNGRGRGGRRGRGRSQVPDKSAAELDKELENYHTEAMQTS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
275		25		75	0.996477
277	25	75			0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain