SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8314

Length: 381 nt

UniGene Fasta

>biog2_v2.0_unigene8314
CTTCACACCTCAAGCTAAGAGGCTCGAGACAAAAATTGAAAGGGATTGGGAAAGGGACCGGGATAGGGATTTTGAACTCATGCCTCCTCCAGGTAGTCACAAGAGGACCATTCCTGCACCTGTTGATGTTGATCAGCCTATTGATCCTAATGAACCTACATATTGTGTCTGTCATCAGGTTTCTTTTGGAGACATGATTGCCTGTGATAATGAAAATTGCGAAGGAGGAGAATGGTTTCATTATGCATGTGTTGGGTTAAGCTCTGAAACACGCTTCAAGGGGAAGTGGTTCTGCCCCACTTGCAGACTTCTACCGCGCAAGGGTGCTTCAGATCATTCTGCATGACAATTTGGGTATATTTCGTGCAAAATTTACTGATG

Ace file of the UniGene biog2_v2.0_unigene8314

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2074	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger, FYVE/PHD-type [Medicago truncatula]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	phd finger protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	methylated histone residue binding	GO:0035064	Molecular Function	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQD7

Fln msg: your sequence is shorter than subject: 115 - 228

Fln protein: FTPQAKRLETKIERDWERDRDRDFELMPPPGSHKRTIPAPVDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCEGGEWFHYACVGLSSETRFKGKWFCPTCRLLPRKGASDHSA*

Protein Length: 116

Fln nts: CTTCACACCTCAAGCTAAGAGGCTCGAGACAAAAATTGAAAGGGATTGGGAAAGGGACCGGGATAGGGATTTTGAACTCATGCCTCCTCCAGGTAGTCACAAGAGGACCATTCCTGCACCTGTTGATGTTGATCAGCCTATTGATCCTAATGAACCTACATATTGTGTCTGTCATCAGGTTTCTTTTGGAGACATGATTGCCTGTGATAATGAAAATTGCGAAGGAGGAGAATGGTTTCATTATGCATGTGTTGGGTTAAGCTCTGAAACACGCTTCAAGGGGAAGTGGTTCTGCCCCACTTGCAGACTTCTACCGCGCAAGGGTGCTTCAGATCATTCTGCATGA___CAATTTGGGTATATTTCGTGCAAAATTTACTGATG

Fln Alignment:

biogeco2_mira_c3084___PAPVDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCEGGEWFHYACVGLSSETRFKGKWFCPTC
B8LQD7_________________PLSMDLDLPVDPNEPTYCFCNQVSYGEMIACDNPDCK-IEWFHYGCVGI--KERPKGKWYCSNC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
244		33		66	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain