SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8273

Length: 426 nt

UniGene Fasta

>biog2_v2.0_unigene8273
AGAAGCGGGCCGGCCCTTGTCTGTAAGGAGAGAGGCCATAAATGGGAAGCAAGACCCGTCTCAGGCCGTGGCTGCTGGTGTTTTTCAAATCAATACTGCCGTTTCGACGTTTCAAAGGCTTGTCAATACCCTCGGAACGCCCAAGGATACTCCAGAACTCAGGGAGCGATTGCATAAGACTAGGCAACACATTGGGCAGCTGGTAAAGGACACATCTGCTAAACTGAAAGCTGCCAGTGAAACTGATCAGCATACGGCAGTTAGTGCAAACAAGAAGATAGCAGATGCAAAACTTGCAAAAGATTTTCAAGCTGTTCTAAAGGAGTTTCAGAAAGGCCAACGGCTTGCAGCTGAACGTGAGACAGCTTATACACCCTTTGTTCCCCAAGCAGTATTGCCTTCAAGCTATGTTGCAAGTGAATTGAA

Ace file of the UniGene biog2_v2.0_unigene8273

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15978	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	syntaxin [Glycine max]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	syntaxin	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	88%
Blast2go	regulation of cell shape during vegetative growth phase	GO:0000903	Biological Process	88%
Blast2go	amyloplast organization	GO:0009660	Biological Process	88%
Blast2go	negative gravitropism	GO:0009959	Biological Process	88%
Blast2go	vacuole organization	GO:0007033	Biological Process	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVS9

Fln msg: Distance to subject end: 125 aas, atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning, your sequence is shorter than subject: 141 - 273

Fln protein: EAGRPLSVRREAINGKQDPSQAVAAGVFQINTAVSTFQRLVNTLGTPKDTPELRERLHKTRQHIGQLVKDTSAKLKAASETDQHTAVSANKKIADAKLAKDFQAVLKEFQKGQRLAAERETAYTPFVPQAVLPSSYVASEL

Protein Length: 142

Fln nts: AGAAGCGGGCCGGCCCTTGTCTGTAAGGAGAGAGGCCATAAATGGGAAGCAAGACCCGTCTCAGGCCGTGGCTGCTGGTGTTTTTCAAATCAATACTGCCGTTTCGACGTTTCAAAGGCTTGTCAATACCCTCGGAACGCCCAAGGATACTCCAGAACTCAGGGAGCGATTGCATAAGACTAGGCAACACATTGGGCAGCTGGTAAAGGACACATCTGCTAAACTGAAAGCTGCCAGTGAAACTGATCAGCATACGGCAGTTAGTGCAAACAAGAAGATAGCAGATGCAAAACTTGCAAAAGATTTTCAAGCTGTTCTAAAGGAGTTTCAGAAAGGCCAACGGCTTGCAGCTGAACGTGAGACAGCTTATACACCCTTTGTTCCCCAAGCAGTATTGCCTTCAAGCTATGTTGCAAGTGAATTGAA

Fln Alignment:

biogeco2_mira_c3013___EAGRPLSVRREAINGKQDPSQAVAAGVFQINTAVSTFQRLVNTLGTPKDTPELRERLHKTRQHIGQLVKDTSAKLKAASETDQHTAVSANKKIADAKLAKDFQAVLKEFQKGQRLAAERETAYTPFVPQAVLPSSYVASEL
A9NVS9_________________ESGRPLSIRREAINGKQDPSQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELRERLHKTRQHIGQLVKDTSAKLKAASETDQHTEVSANKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFIPQAVLPSSYIASEL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
140	25	75			0.996473
141		75		25	0.996473
142		75	25		0.996473
143	75		25		0.996473
144	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain