SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8270

Length: 564 nt

UniGene Fasta

>biog2_v2.0_unigene8270
GTATCTGCGACCCATAATGTATATGTTTCACCAACTTACGACTCTGCCAAGATGGAGAATCTCAATTCACACAATTCAAAAAGTTATTACGCCTGTGTGGGAGAAAGTACTCGTGCATATCAAAGTCCATCAAAAGATTTGACAGCTATCAATAATCGCCTGAACAGCCGGCGTGTCAGTGGGAGACTCAACTTTGACGATCCAGGGCTAGTAAGTGACTCTGTTGTTGCTGGGAGTTTGTATCCTCCTTCCCAAAGCTCTGTCCATCTCACCTCAGATTCCGTACTGAGCCAGTCTCAGTCTCAGTCGCAATCTCAGTCAGTGTTGTTGGCAAGCTCAGCGTCGCCTATTAAGCACAAGTAAATTGGCAGACCATACAGTGCTTGTACATTATTATTATTTTTCAATACACGCCTGTACATCAACACTGAGGCTTGCTCAGGTTCATTTCCGTTTTAGCATTTCTCCAAGATTCTTGGTGAAATATAGAGTCCAGTGGTGTCGGCTTCAATTGGTTCGGCTGTAGAGTTACGCAACAGAAAGTGGGCTTGATAACAACGCTCA

Ace file of the UniGene biog2_v2.0_unigene8270

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25181	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Retinoblastoma-related protein n=1 Tax=Cocos nucifera RepID=RBR_COCNU	-	-	59%
FL-Next	sp=Retinoblastoma-related protein 1; Pisum sativum (Garden pea).	-	-	74%
Blast2go	retinoblastoma-related protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	74%
Blast2go	regulation of cell growth	GO:0001558	Biological Process	74%
Blast2go	embryo sac development	GO:0009553	Biological Process	74%
Blast2go	negative regulation of cell division	GO:0051782	Biological Process	74%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	74%
Blast2go	regulation of DNA endoreduplication	GO:0032875	Biological Process	74%
Blast2go	generative cell differentiation	GO:0022619	Biological Process	74%
Blast2go	leaf development	GO:0048366	Biological Process	74%
Blast2go	regulation of nuclear division	GO:0051783	Biological Process	74%
Blast2go	G1/S transition of mitotic cell cycle	GO:0000082	Biological Process	74%
Blast2go	cell fate specification	GO:0001708	Biological Process	74%
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	cytosol	GO:0005829	Cellular Component	74%
Blast2go	regulation of stem cell maintenance	GO:2000036	Biological Process	74%

Source	InterPros	Term	Type	Identity
Sma3	Protamine P1	IPR000221	-	-
Sma3	D-alanine--D-alanine ligase/VANA/B/C, conserved site	IPR000291	-	-
Sma3	Retinoblastoma-associated protein, B-box	IPR002719	-	-
Sma3	Retinoblastoma-associated protein, A-box	IPR002720	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin-like	IPR013763	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SLZ4

Fln msg: your sequence is shorter than subject: 121 - 1026

Fln protein: VSATHNVYVSPTYDSAKMENLNSHNSKSYYACVGESTRAYQSPSKDLTAINNRLNSRRVSGRLNFDDPGLVSDSVVAGSLYPPSQSSVHLTSDSVLSQSQSQSQSQSVLLASSASPIKHK*

Protein Length: 122

Fln nts: GTATCTGCGACCCATAATGTATATGTTTCACCAACTTACGACTCTGCCAAGATGGAGAATCTCAATTCACACAATTCAAAAAGTTATTACGCCTGTGTGGGAGAAAGTACTCGTGCATATCAAAGTCCATCAAAAGATTTGACAGCTATCAATAATCGCCTGAACAGCCGGCGTGTCAGTGGGAGACTCAACTTTGACGATCCAGGGCTAGTAAGTGACTCTGTTGTTGCTGGGAGTTTGTATCCTCCTTCCCAAAGCTCTGTCCATCTCACCTCAGATTCCGTACTGAGCCAGTCTCAGTCTCAGTCGCAATCTCAGTCAGTGTTGTTGGCAAGCTCAGCGTCGCCTATTAAGCACAAGTAA___ATTGGCAGACCATACAGTGCTTGTACATTATTATTATTTTTCAATACACGCCTGTACATCAACACTGAGGCTTGCTCAGGTTCATTTCCGTTTTAGCATTTCTCCAAGATTCTTGGTGAAATATAGAGTCCAGTGGTGTCGGCTTCAATTGGTTCGGCTGTAGAGTTACGCAACAGAAAGTGGGCTTGATAACAACGCTCA

Fln Alignment:

biogeco2_mira_c3008___VSATHNVYVSPTYDSAKMENLNSHNSKSYYACVGESTRAYQSPSKDLTAINNRLN-SRRVSGRLNFD--DPGLVSDSVVAGSLYPPSQSS
Q9SLZ4_________________VSATHNVYVSPLR-SSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
286	33	66			0.997461
291		66	33		0.997453

SSRs (tot: 1)

Start position	End position	Sequence	Length
390	401	ATT ATT ATT ATT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain