SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8260

Length: 550 nt

UniGene Fasta

>biog2_v2.0_unigene8260
ATGGGGATGAATAATTTCAAGTATCCTTATTTCTACTACTTGGGTATTGAAGGAATCAGCATAGCGGGGCAGAAACTCGAACTCCCACCTAGTCTGACTAAATTTGACAAGGAAGGGAATGGTGGACTGATTATTGATTCCGGCACCACCTTCACCATGCTTCCAGCATCTCTGCACAGAAAGGTCTTAGACAAGCTCAAGTCCACAGTTAAGTACACCAGATCTGTTGATTATGAGACCGCCTCCGGGCTGGACCTCTGCTACGAGCTGCCCACTGCAGAAGGGTCTTCTCCTGTGTTGCCAACCTTCTCATTGCACTTCAAGAACAATGCTACAATCACACTTCCAGCTGAGAATTATATGTTTATGATGTCTGATCCTAGTGATGCTACCAGGACTAGTACTGGTACTGCTGCTGCAGCAGTGGGATGCCTGATCATTTTGAGCAGTGGAGATGAAGTGCATGGCCCTGTTGCAGTTTTGGGTAACTATCAACAACAGAACCTTCATGTTGTCTATGATGTGGAGAAAGAAAGAGTTGGATTTCAAC

Ace file of the UniGene biog2_v2.0_unigene8260

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22828	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] dbj\|BAB09497.1\| chloroplast nucleoid DNA-binding protein-like [Arabidopsis thaliana] gb\|AED95207.1\| aspartyl protease family protein [Arabidopsis thaliana]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	aspartyl protease family protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase aspartic, catalytic	IPR009007	-	0.0	-
Sma3	Peptidase A1	IPR001461	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC09

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 183 - 370

Fln protein: MGMNNFKYPYFYYLGIEGISIAGQKLELPPSLTKFDKEGNGGLIIDSGTTFTMLPASLHRKVLDKLKSTVKYTRSVDYETASGLDLCYELPTAEGSSPVLPTFSLHFKNNATITLPAENYMFMMSDPSDATRTSTGTAAAAVGCLIILSSGDEVHGPVAVLGNYQQQNLHVVYDVEKERVGFQ

Protein Length: 184

Fln nts: ATGGGGATGAATAATTTCAAGTATCCTTATTTCTACTACTTGGGTATTGAAGGAATCAGCATAGCGGGGCAGAAACTCGAACTCCCACCTAGTCTGACTAAATTTGACAAGGAAGGGAATGGTGGACTGATTATTGATTCCGGCACCACCTTCACCATGCTTCCAGCATCTCTGCACAGAAAGGTCTTAGACAAGCTCAAGTCCACAGTTAAGTACACCAGATCTGTTGATTATGAGACCGCCTCCGGGCTGGACCTCTGCTACGAGCTGCCCACTGCAGAAGGGTCTTCTCCTGTGTTGCCAACCTTCTCATTGCACTTCAAGAACAATGCTACAATCACACTTCCAGCTGAGAATTATATGTTTATGATGTCTGATCCTAGTGATGCTACCAGGACTAGTACTGGTACTGCTGCTGCAGCAGTGGGATGCCTGATCATTTTGAGCAGTGGAGATGAAGTGCATGGCCCTGTTGCAGTTTTGGGTAACTATCAACAACAGAACCTTCATGTTGTCTATGATGTGGAGAAAGAAAGAGTTGGATTTCAAC

Fln Alignment:

biogeco2_mira_c2993___KYPYFYYLGIEGISIAGQKL-ELPPSLTKFDKEGNGGLIIDSGTTFTMLPASLHRKVLDKLKSTVKYTRSVDYETASGLDLCYELPTAEGSSPVLPTFSLHFKNNATITLPAENYMFMMSDPSDXXXXXXXXXXXXVGCLIILSSGDEVH---GPVAVLGNYQQQNLHVVYDVEKERVGF
D5AC09_________________QYGVYYYIGLRGVSIGGKRLKQLPSKLLRFDTKGNGGTIIDSGTTFTVFSDEIFKHIAAGFASQIGYRRAGEVEDKTGMGLCYDVTGLE--NIVLPEFAFHFKGGSDMVLPVANYFSYFSSFDSI-------------CLTMISSRGLLEVDSGPAVILGNDQQQDFYLLYDREKNRLGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain